Gene Information

Name : PCC21_019740 (PCC21_019740)
Accession : YP_006646630.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2214902 - 2215759 bp
Length : 858 bp
Strand : -
Note : -

DNA sequence : 
ATGACGCTCATTAGCTGGCTCATCGATCCCCTATCCTACCCGTTCATGCAGCGTGCGTTACTCGCCGCCGTCGTCACCGG
TACGGTCTGCGCCGTGCTGTCGTGTTATCTGGTGCTGAAAGGCTGGTCGCTAATGGGTGATGCCATTTCCCATGCTGTGC
TGCCAGGCATCGTTGTCGCGTTTTTACTGGGGATCCCATTAGTTATCGGAGCTTTCGTTTCCGGTATTTTTTGTGCGGTC
GCAACGGGCTACGTGAAGGAGCACAGCCGGGTCAAAGAAGACACCGTCATGGGGATCATCTTTTCCGGCATGTTTGCGCT
GGGGCTCGTGATGTTTGCACGTATCGATACCGATCAGCACCTGAACCATATTCTGTTTGGTAACGTGCTGGGTATCACTC
AGCAAGAGCTGACGCAAATCTTACTGATTGCCGGGGTGACGCTGGCCATCATCTTGTTAAAGCGCCGAGATTTTATGCTG
TACTGCTTCGATCCCAATCATGCCCGCGTCATTGGCCTGCCCGTTAAGCTACTGCACTACGGATTGCTGAGCCTGTTGGC
GATGACGATTGTCGCATCATTACAGGCCGTCGGCGTTATTCTGGTGATTGCGATGCTGATTGCGCCGGGCATTATTGCCT
TTATGGTTTGTAAGCGCTTCGAGCGGATGGTTCTCGTCGCCACGCTGGTTTCCGTCATTTCCTGTATTGCCGGCACCCTG
ATCAGTTTCTACATCGATGGCGCCACAGGCCCTTGCATCGTCATCGTTCAGGCCCTGTTCTTTACGCTAGCGCTGACCTA
CCACCAGCTAAAACTGCGTCGTCAGGCAACCTCTCAAGCTATCACCGACGCACTGTAA

Protein sequence : 
MTLISWLIDPLSYPFMQRALLAAVVTGTVCAVLSCYLVLKGWSLMGDAISHAVLPGIVVAFLLGIPLVIGAFVSGIFCAV
ATGYVKEHSRVKEDTVMGIIFSGMFALGLVMFARIDTDQHLNHILFGNVLGITQQELTQILLIAGVTLAIILLKRRDFML
YCFDPNHARVIGLPVKLLHYGLLSLLAMTIVASLQAVGVILVIAMLIAPGIIAFMVCKRFERMVLVATLVSVISCIAGTL
ISFYIDGATGPCIVIVQALFFTLALTYHQLKLRRQATSQAITDAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-67 51
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-67 51
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-67 51
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-68 51
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-68 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_019740 YP_006646630.1 chelated iron transport system membrane protein BAC0442 Protein 2e-104 78
PCC21_019740 YP_006646630.1 chelated iron transport system membrane protein BAC0352 Protein 3e-68 51
PCC21_019740 YP_006646630.1 chelated iron transport system membrane protein BAC0441 Protein 4e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_019740 YP_006646630.1 chelated iron transport system membrane protein VFG0528 Protein 3e-68 51