Gene Information

Name : PCC21_016640 (PCC21_016640)
Accession : YP_006646320.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : exogenous ferric siderophore TonB-dependent receptor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1878328 - 1880427 bp
Length : 2100 bp
Strand : +
Note : -

DNA sequence :
TTGGCACTTGCTACAACCGTATCTACACCCGTTATCGCTGCACAGGACGATACGCTGGTTGTAACGGCTTCTGGCTATGA
ACAAAAAATCACTGAGGCGGCAGCGAGTATTTCCGTTGTTAGCCAGGATGAACTGACGAAGCGTAAATATAACGATCTTG
GCGAAGCGCTTAGCGACGTAGAAGGCGTGGATGTGCGTAGTTCAACGGGGAAAACGGGCGGTCTGGACATCAGTATTCGC
GGTATGCCAAGTGACTACACGCTGATTCTGGTTGATGGTATTCGCCAGAATGGTTCATCGGATGTCACCCCGAATGGGTT
TGGTACGATGAACACCAGCTTTATTCCCCCGTTGGCAGCGATCGAACGTATTGAAGTTATCCGCGGGCCGATGTCAACGC
TATATGGCTCTGATGCGATGGGCGGTGTGGTAAACATTATCACCAAAAAAGCGTCGAAAGAGTGGGTTGGGAATATTACG
CTGGATCATACCTTCCAGGAAGACAGAGACTATGGTGACGCTTCCAAGTTCTCGATTTATTCCAGCGGTGCGCTGATCGA
AGACAAACTGGGACTTGCCCTGCGCGGTAATATTTTACGCCGTGATGCGTCAGAGGTGAGTTCATCCTCGACTGGACAGG
AACTCAGTACGCGCGGCCCGAATCCAGTGAAGTCAGATAATTACCTCCTCGGTGGCAAACTATCCTGGCTGTTAGATAGT
CGCAATACACTGTGGCTCGATGGTGAAGTCTCCAATCAGAAATATGATAACAAGGAAGAACAACTCGGTGCGCTGGGAGC
GGGTACCGCAGCTCGGGGCGGCGGTTATGAAGATACACTGCGTTATGAGCGTCGCAAGATTACGCTGGGTAGCGATAATC
AACTCGATTTTGGTACATGGAATTCAAGCTTGTCCTTCAACCAGACTGAAAATAAAGGACGTTTGATCCCTCGCTCTACG
GTACCTGCGGGCTCAGCAACGGCAGGGCAAAAGCGCGAGCTTAAAAACACTAACTACATCCTTGATACGAAACTGGTGAG
CCCGCTAGGAGAGAGTCATTTACTGACGTTAGGTGGGCAATATTGGAATGCCGTCATGAAAGACGGGATTGTTCTGGCGA
ATACGGGCGAAAAATTCGAACAGAATTCGTGGTCGCTTTTTGCTGAAGATGAATGGCGTATCGTTGATTCGCTCGCGCTA
ACGACAGGTGCTCGTTATGAACATCATGAAGCATTTGGTGGTCATGTGAGCCCGCGTGCCTATTTAGTGTGGAATGCGTT
GGATGAATTAACGATCAAAGGTGGGGTAAGTACAGGCTACAAAACACCATCATTGGCTCGGTTACATAATGGGATTAGTG
GCGTAACGGGCCAAGGAACGATCAATACGATCGGTAATCCTAATCTGAAGCCAGAAGAAAGCGTGAATACGGAACTGGGT
GCGTACTATGAGCATTTTAGCGGTTTCTCTACTAACGCTACGCTTTTCCATAACCGCTTCCGCAATAAGATCGATAGTTA
CGACATTGATACAGTAACGTCTAGCTATCGCAATATCGGTAAAGCTAACACACAAGGTCTGGAACTGGGTTCGACAATCC
CGCTATGGTCGGATAACTGGACGCTGAATGTGAATTACACCTTTACTGACAGCGAGCAGAAAGGCGGAGAAAATCCCGGT
GCTCGCTTGACCAATACGCCTAAGCACATGGCAAATGCCCGTTTAAACTGGAATGTTAACGAGCAATTGACCACCTGGCT
TAAAGCTGAATATCGGGGCAAAACAGCACGCTTTACGGAGAATTATTCCACGCTTGCCGCAGCGAGCAATCAAGCAAACA
GAGTCGTCTATGACAATCTTGGCTCGGATTTCAAATCGTTTACCGTCGTGAATCTGGGCGGATCGTATAAGATCTCTAAA
GATGTAACATTGAACGGGTCAGTTAATAACCTGTTAGATAAAGACTTCACCAAAACCTATGTTTTCCCTGTTGGGACGGG
TACCACGACGGCTGGCGATTACTTTACGTCAAGCCAGGTGACGTCTGGCTCCGTGCTGCCGGGTCGTAACTACTGGATGT
CAGTAAACATTAATTTCTGA

Protein sequence :
MALATTVSTPVIAAQDDTLVVTASGYEQKITEAAASISVVSQDELTKRKYNDLGEALSDVEGVDVRSSTGKTGGLDISIR
GMPSDYTLILVDGIRQNGSSDVTPNGFGTMNTSFIPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITKKASKEWVGNIT
LDHTFQEDRDYGDASKFSIYSSGALIEDKLGLALRGNILRRDASEVSSSSTGQELSTRGPNPVKSDNYLLGGKLSWLLDS
RNTLWLDGEVSNQKYDNKEEQLGALGAGTAARGGGYEDTLRYERRKITLGSDNQLDFGTWNSSLSFNQTENKGRLIPRST
VPAGSATAGQKRELKNTNYILDTKLVSPLGESHLLTLGGQYWNAVMKDGIVLANTGEKFEQNSWSLFAEDEWRIVDSLAL
TTGARYEHHEAFGGHVSPRAYLVWNALDELTIKGGVSTGYKTPSLARLHNGISGVTGQGTINTIGNPNLKPEESVNTELG
AYYEHFSGFSTNATLFHNRFRNKIDSYDIDTVTSSYRNIGKANTQGLELGSTIPLWSDNWTLNVNYTFTDSEQKGGENPG
ARLTNTPKHMANARLNWNVNEQLTTWLKAEYRGKTARFTENYSTLAAASNQANRVVYDNLGSDFKSFTVVNLGGSYKISK
DVTLNGSVNNLLDKDFTKTYVFPVGTGTTTAGDYFTSSQVTSGSVLPGRNYWMSVNINF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
r4 AAC61730.1 exogenous ferric siderophore receptor R4 Not tested PAI I CFT073 Protein 4e-177 56
c3610 NP_755485.1 bifunctional enterobactin receptor/adhesin protein Not tested PAI I CFT073 Protein 4e-179 56
ECUMN_3356 YP_002414032.1 bifunctional enterobactin receptor/adhesin protein Virulence Not named Protein 4e-179 56
unnamed CAC39288.1 hypothetical protein Not tested LPA Protein 6e-179 56
Z1178 NP_286713.1 bifunctional enterobactin receptor/adhesin protein Virulence TAI Protein 5e-179 55
Z1617 NP_287121.1 bifunctional enterobactin receptor/adhesin protein Not tested TAI Protein 5e-179 55
iha AAF36432.2 adhesin Virulence TAI Protein 4e-179 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_016640 YP_006646320.1 exogenous ferric siderophore TonB-dependent receptor VFG1731 Protein 2e-179 56