Gene Information

Name : PCC21_015510 (PCC21_015510)
Accession : YP_006646207.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : achromobactin transport ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1772150 - 1773001 bp
Length : 852 bp
Strand : +
Note : -

DNA sequence : 
ATGCCAGAGAATGTGCAGCCAACACGCATCCCTCCAACTGACCGCGAGGCGATTGCCAGCCAGTCGCTGACGCTGAGTTA
CGAAAAACAGGTCGTGATTGATGCGCTGGATATTACGCTGCCAGCCGGGAAAATCTCGGTGCTGGTGGGCAGTAACGGCT
GTGGCAAGAGCACGTTACTGAAGTCGTTTGCCCGTTTGCTGAAACCCACGAGCGGGACGATTATTGTCAACGGGGCGGAT
ATTCATCGGCAATCCACCGTTGAGGTGGCGAAGTCACTGGCGATTCTTCCGCAAACGCCGACCGCGCCGGAAGGCCTGAC
GGTCTATCAACTGGTGAAGATGGGGCGCTACCCGCATCAGTCATGGTTGAAGCAGTGGTCGGCCACGGATGAAGAAAAAG
TGCTGCAGGCGTTGCGCAGCACCGGCGTGCTGGCGTTAAAGGATCGCGCGGTGGATTCGCTGTCCGGCGGGCAGCGCCAG
CGCGTCTGGGTCGCGATGACGCTGGCGCAGGATACCGACATCGTCCTGCTGGATGAACCAACGACCTATCTCGATCTGGC
GCACCAGATGGAGGTGCTGGATTTGCTGCGGGAGTTGAACGCGCAGCAGCACAAAACCATCGTGATGGTGCTGCATGATT
TGAATCTGGCGTGTCGCTACGCGCATCACATGGTGGCCGTACATAATCGGACGGTATTTGCGCAGGGCAATCCGCGCGAC
ATTCTCACGGAAGCCACGGTAAAGACGGTGTTTAACCTGAACTGTCGCATCATTGACGATCCGTTCTTCGGTACGCCGCT
GTGTATTCCGTTTGGACGTGAAGCGGCGGAGACTGCGGCCGATGTCGGCTAA

Protein sequence : 
MPENVQPTRIPPTDREAIASQSLTLSYEKQVVIDALDITLPAGKISVLVGSNGCGKSTLLKSFARLLKPTSGTIIVNGAD
IHRQSTVEVAKSLAILPQTPTAPEGLTVYQLVKMGRYPHQSWLKQWSATDEEKVLQALRSTGVLALKDRAVDSLSGGQRQ
RVWVAMTLAQDTDIVLLDEPTTYLDLAHQMEVLDLLRELNAQQHKTIVMVLHDLNLACRYAHHMVAVHNRTVFAQGNPRD
ILTEATVKTVFNLNCRIIDDPFFGTPLCIPFGREAAETAADVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 9e-56 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 9e-56 46
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-60 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 6e-58 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-58 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-58 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-58 46
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-51 45
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-48 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_015510 YP_006646207.1 achromobactin transport ATP-binding protein BAC0164 Protein 2e-51 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_015510 YP_006646207.1 achromobactin transport ATP-binding protein VFG0925 Protein 8e-64 48
PCC21_015510 YP_006646207.1 achromobactin transport ATP-binding protein VFG1042 Protein 1e-51 45