Gene Information

Name : PCC21_014890 (PCC21_014890)
Accession : YP_006646145.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1709582 - 1710310 bp
Length : 729 bp
Strand : +
Note : -

DNA sequence : 
ATGTCTTACTCCATCGGTGAATTTTCCCGGCTTTGTGGGATAAATGCGACGACGCTCCGCGCCTGGCAGCGTCGTTACGG
CCTGCTCAAACCGATGCGCACAGACGGTGGCCACCGGTTGTACAGCGATGACGATGTCCAGCAGGCGTTAAAAATTCTCG
ACTGGGTGAAAAAAGGGGTCCCGGTCAGCCAGGTGAAACCGCTGCTGGCTCGCCCAGGCACGCGTCGAACAAATAATTGG
CTTGCCCTGCAGGAAAGTATGTTGCAGCGGTTGAAAGAGGGAAAAATCGAATCCTTGCGCCAGCTGATTTACGACGCGGG
CCGCGAGTATCCGCGTACGGAACTGGTCCGTGAAGTATTGCGCCCGCTGCGCAGCAAAGTCTCGGCCAATATTCCGGCGA
TGATGACCCTGCGCGAAATCCTCGATGGCATCATCATCTCCTACACGTCGTTTTGCCTCGAAGGGGATAAAAGAGCGCCA
GGTGATAACTATCTGATTACCGGCTGGCATCTGAGCGATCCGTGCGAAATTTGGCTCGAAGCGCTTATGCGCACCGGTCA
GGGGCTTCGCATTGACGTCCTTCCCGTACCGCCAGCCACTCTGGCTCCGGAGATTTTCCCGGAGCGAAAATGGCTGCTGG
TCACCACCGGTAAACTCACCGCGGCTCGCAAAAAACAGATTGACCTTTGGCAACAGCACGTCGCTTCCTTAGACGTCATT
CCTCTGTAA

Protein sequence : 
MSYSIGEFSRLCGINATTLRAWQRRYGLLKPMRTDGGHRLYSDDDVQQALKILDWVKKGVPVSQVKPLLARPGTRRTNNW
LALQESMLQRLKEGKIESLRQLIYDAGREYPRTELVREVLRPLRSKVSANIPAMMTLREILDGIIISYTSFCLEGDKRAP
GDNYLITGWHLSDPCEIWLEALMRTGQGLRIDVLPVPPATLAPEIFPERKWLLVTTGKLTAARKKQIDLWQQHVASLDVI
PL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SC1411 YP_216398.1 MerR family transcriptional regulator Not tested SPI-2 Protein 1e-91 76
STY1730 NP_456138.1 putative transcriptional regulator Not tested SPI-2 Protein 4e-92 76
t1258 NP_805061.1 transcriptional regulator Not tested SPI-2 Protein 4e-92 76
orf242 NP_460355.1 regulatory protein Not tested SPI-2 Protein 2e-91 75
ORF 242 CAB37409.1 - Not tested SPI-2 Protein 2e-91 75

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_014890 YP_006646145.1 transcriptional regulator VFG0491 Protein 1e-91 75