Gene Information

Name : PCC21_012550 (PCC21_012550)
Accession : YP_006645911.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1436181 - 1437140 bp
Length : 960 bp
Strand : +
Note : -

DNA sequence : 
ATGACGCTCGAACTCATCCCTGTTGGTATCAGCGCCTGTTTACTCGGTAATCCTGTGCGGTTTGATGGCGGACACAAGCG
TTTGACGTTTGCCGCTGAACAACTGGCACCCTATTTTCGTTTTGAACCGGTCTGCCCGGAAATGGCGATTGGTTTACCAG
TGCCGCGTCCGGCGCTCAGGCTGGTGCGCAAAGGGGAAAGCGAGATCACGCTGCGCGCCAGCAATGGTTCGCCGCTGGAC
GTCACCCAGCAGATGACGGCGTTTTCCGCTGACAAAGTCAGCCAGCTTCAACACTTATGCGGTTATATCGTCTGTGCCAA
ATCGCCGAGCTGCGGTATGGAGCGCGTGAAGGTTTACGATGAAGCGCAAAAAGATGCGCGTAAAAGCGGAGTCGGCCTGT
TTACGCAGGAGCTGATGCGGCAAATGCCCTGGCTACCGGTTGAGGAAGATGGACGCCTGCAGGATCCCGGTTTGCGGGAG
AATTTCATTGAGCGCGTTTATGCGTTACACGAACTGAACCAGCTATGGCAAAACGGGCTGAGCCGTGGTGCGCTGATTGC
CTTTCATAGCCGCTATAAACTCCTGCTGTTGGCACATTCCCAGCCGGAATACCGCGAGCTAGGGCCGTTTGTTGCGGGGA
TCGATAAGTGGGAATCGCTGGAAGACTACATTGTTGAATACCGGAAGCGGTTGATGAAGCTATTGTCGACGCCTGCGACG
CGGCGCAATCACACCAATGTGTTGATGCACGTTCAGGGCTACTTCCGACGCCAGCTGAATTCTCAACAGCGACAGGAACT
GGCGCAGCTCATCGATCGCTATCGACAGGGTTTGCAGCCGCTGCTAGCACCTATCACGTTGTTAAAACATTACATGGCGG
AATACCCCGATGCGTATCTGGCTCAGCAGCGTTACTTTGAGCCGTACCCCGAGGCATTACGCCTGCGTTACGGACACTAG

Protein sequence : 
MTLELIPVGISACLLGNPVRFDGGHKRLTFAAEQLAPYFRFEPVCPEMAIGLPVPRPALRLVRKGESEITLRASNGSPLD
VTQQMTAFSADKVSQLQHLCGYIVCAKSPSCGMERVKVYDEAQKDARKSGVGLFTQELMRQMPWLPVEEDGRLQDPGLRE
NFIERVYALHELNQLWQNGLSRGALIAFHSRYKLLLLAHSQPEYRELGPFVAGIDKWESLEDYIVEYRKRLMKLLSTPAT
RRNHTNVLMHVQGYFRRQLNSQQRQELAQLIDRYRQGLQPLLAPITLLKHYMAEYPDAYLAQQRYFEPYPEALRLRYGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SC1410 YP_216397.1 inner membrane protein Not tested SPI-2 Protein 6e-96 61
STY1731 NP_456139.1 putative pathogenicity island protein Not tested SPI-2 Protein 4e-96 61
t1257 NP_805060.1 pathogenicity island protein Not tested SPI-2 Protein 4e-96 61
orf319 NP_460354.1 inner membrane protein Not tested SPI-2 Protein 4e-96 61
ORF 319 CAB37410.1 - Not tested SPI-2 Protein 3e-96 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_012550 YP_006645911.1 hypothetical protein VFG0490 Protein 2e-96 61