Gene Information

Name : PCC21_010030 (PCC21_010030)
Accession : YP_006645659.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : iron-dicitrate transporter ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1130279 - 1131046 bp
Length : 768 bp
Strand : -
Note : -

DNA sequence : 
ATGGAACTGACAACACAAAACCTGACGGCGGGCTATGGCGACAAGCGCATTCTTGACGGATTGTCGCTGTCGCTGCCCGC
CGGAAAAATTACCGCCCTGCTCGGCCCCAACGGCTGCGGCAAGTCAACGCTGCTGAAGTGCTTTGCCAAGCTGCTTACCC
CGGAATCCGGCGCTATTCAGCTCGACGGCAGGCCGCTCTCTGCGTTTTCTGCCCGCCAACTCTCACGCCATCTGGCGCTG
TTACCGCAGCAGCATTTGACGCCAGAGGGGATCACCGTGCGTGACATGGTGGCCTACGGACGCAGCCCTTGGCTATCACT
GTGGGGACGATTATCGCCGGACGATCGCCAGCACGTGCAGCTCGCAATGGAGAAGACGCACATCGTCGACCTCGCCGACA
AACGGTTAACCGATTTGTCCGGTGGACAGCGTCAGCGGGCGTTTCTGGCGATGCTGCTGGCGCAGGATACGCCCGTCGTC
CTGCTCGATGAACCGACAACCTACCTCGATATCAATCATCAGGTCGAGTTAATGAAACTGCTGCGTGAACTCAATCAGGC
TGGCAAAACGGTCGTGACCGTCCTGCACGATCTGAATCAGGCCAGCCGCTACTGCGATCATCTGGTGATGCTGGCAGGTG
GACGCGTGATGGCGCAGGGCTCACCGCACGAGGTAATGAAACCGGCATTACTACAGCATGTGTTCAGCATTGATGCGGAG
ATCCACGCCGAACCCGTTTCAGGGCAGCCGATGTGTGTGGTGCGGTGA

Protein sequence : 
MELTTQNLTAGYGDKRILDGLSLSLPAGKITALLGPNGCGKSTLLKCFAKLLTPESGAIQLDGRPLSAFSARQLSRHLAL
LPQQHLTPEGITVRDMVAYGRSPWLSLWGRLSPDDRQHVQLAMEKTHIVDLADKRLTDLSGGQRQRAFLAMLLAQDTPVV
LLDEPTTYLDINHQVELMKLLRELNQAGKTVVTVLHDLNQASRYCDHLVMLAGGRVMAQGSPHEVMKPALLQHVFSIDAE
IHAEPVSGQPMCVVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-92 69
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-54 49
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-54 49
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-54 49
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-54 49
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-54 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-54 44
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 7e-52 42
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 7e-52 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-53 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-53 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-53 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-53 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_010030 YP_006645659.1 iron-dicitrate transporter ATP-binding subunit BAC0164 Protein 2e-92 69

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_010030 YP_006645659.1 iron-dicitrate transporter ATP-binding subunit VFG1042 Protein 2e-92 69
PCC21_010030 YP_006645659.1 iron-dicitrate transporter ATP-binding subunit VFG0925 Protein 3e-53 46