Gene Information

Name : B005_5466 (B005_5466)
Accession : YP_006644519.1
Strain : Nocardiopsis alba ATCC BAA-2165
Genome accession: NC_018524
Putative virulence/resistance : Virulence
Product : ABC transporter family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5693017 - 5693877 bp
Length : 861 bp
Strand : -
Note : -

DNA sequence : 
GTGAGCGTCGAGGACGTGCGCGGGACCACCGCACCGGTACTGGCGGCAGAGGGGCTCACCCTGGGATACGGGGGCGATCC
GATCGTCCGCGACCTGGACCTGGAGATCGACGAGGGCGGCTTCACCGTGATCGTCGGCCCCAACGGCTGCGGAAAGTCCA
CCCTCCTCAAGGCCCTGGGGCGGGTGAACAGGCCGGTCCGCGGACGGGTGCTGCTGCACGGGACGGACGTGCGCTCCCAA
CGTCCCAAGGCGGTCGCCCGACGGCTGGCGCTGCTCCCGCAGAACCCGCTGGCCCCCGAGGGCATCACGGTCCGGGCGTT
GGCCGCGCGGGGACGCTTCCCCCACCACACCCTGCTGCGCCAGTGGAGCCCCGAGGACGAGGAGGCCATCGCCCGCGCCC
TGGAGCTGACCGGTCTGTCGGACCTGGCCGAGACGCACGTCGGATCGCTCTCCGGAGGACAGCGCCAACGCGCGTGGGTG
GCGATGGTGCTCGCCCAGGACAGCCCCCTCCTGCTCCTGGACGAGCCCACCACCTTCCTGGACATCGCCCACCAGTACGA
CCTCCTGGAACTCTTCGCCGAACTGCACCGGGAAGGACGCACGGTCGTCGCGGTCCTGCACGACCTGGCGCAGGCGGCGC
GGTTCGCGACCCGTCTGGTGATGATGCGCGGGGGAGCGGTGGTCGCCGACGGACCCCCCGAGGAGGTGGTCACCGCCGAC
CGGGTGCGCGCGGTGTTCGGCCTGGACTGCGACGTGATCCCCGATCCCCGCACCGGTACCCCGCTGGTCGTCCCGCACGA
ACGCGCGGTCGCCCGGAAGGCCGCGGATCGTCCCGGGGTCGAGACGGTCCGGTCGAGCTGA

Protein sequence : 
MSVEDVRGTTAPVLAAEGLTLGYGGDPIVRDLDLEIDEGGFTVIVGPNGCGKSTLLKALGRVNRPVRGRVLLHGTDVRSQ
RPKAVARRLALLPQNPLAPEGITVRALAARGRFPHHTLLRQWSPEDEEAIARALELTGLSDLAETHVGSLSGGQRQRAWV
AMVLAQDSPLLLLDEPTTFLDIAHQYDLLELFAELHREGRTVVAVLHDLAQAARFATRLVMMRGGAVVADGPPEEVVTAD
RVRAVFGLDCDVIPDPRTGTPLVVPHERAVARKAADRPGVETVRSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-60 50
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 7e-53 48
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-60 48
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-60 48
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-60 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-60 48
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-51 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-55 42
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-55 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B005_5466 YP_006644519.1 ABC transporter family protein BAC0164 Protein 4e-53 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B005_5466 YP_006644519.1 ABC transporter family protein VFG0925 Protein 1e-70 54
B005_5466 YP_006644519.1 ABC transporter family protein VFG1042 Protein 4e-53 48