Gene Information

Name : B005_4681 (B005_4681)
Accession : YP_006643740.1
Strain : Nocardiopsis alba ATCC BAA-2165
Genome accession: NC_018524
Putative virulence/resistance : Virulence
Product : periplasmic solute binding family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4899191 - 4899997 bp
Length : 807 bp
Strand : -
Note : -

DNA sequence : 
GTGCTCACCACGTTCACGGTCCTGGCCGACATGACCGAGAACGTCGCCGCCGACCGCGTCGACGTGGCCTCCCTGACCCG
CCCCGGCGCCGAGATCCACGGCTACGAACCCACCCCCGACGACCTGGTCCGCGGCCGCGACGCCGACCTGATCCTGGAGA
ACGGCCTGGGGCTGGAGGCCTGGTTCGCCCAGTTCACCGAACGCGTCCAGGCCCCCACCGCCGTACTCGCCGACGGCGTC
GAGACCATCCCCATCACCTCCGGCGGCTACGAGGGCGAACCCAACCCCCACGCCTGGATGTCACCCGCCAACGCCCCGAT
CTACGTCGACAACATCCGCGACGCCCTCACCGAACTCGACCCCGAGGGCGCCGACGAGTTCGCCGAGGCCGCCGAGGCCT
ACAAGGCCGAGATCGCCGAGGTCGCCGACTACCTGGACACCGAACTCGCCGAGGTCCCCTCCTCCTCCCGGGCCCTGGTC
ACCTGCGAAGGGGCCTTCTCCTACCTGGCCCGCGACGCCGACCTCACCGAGAGGTACCTGTGGCCGGTCAACGCCGAACG
CGAGGGCACCCCCCGCCAGATCGCCGCCGTCGCGGACTTCGTCCGGGACAACGACGTCCCCACCGTGTTCTGCGAGAGCA
CCGTCAACGACAGCGCCCAACGCTCGGTGATACGCGAGACCGGCGCCCGCATGGGGGAGACGCTCTACGTCGACTCGCTC
TCCACCGCCGACGGCCCCGTCCCCACCTACCTCGACCTGCTCCGCCACGACGCCGAGGCCATCGTCGACGGCCTCACCGG
CACATGA

Protein sequence : 
MLTTFTVLADMTENVAADRVDVASLTRPGAEIHGYEPTPDDLVRGRDADLILENGLGLEAWFAQFTERVQAPTAVLADGV
ETIPITSGGYEGEPNPHAWMSPANAPIYVDNIRDALTELDPEGADEFAEAAEAYKAEIAEVADYLDTELAEVPSSSRALV
TCEGAFSYLARDADLTERYLWPVNAEREGTPRQIAAVADFVRDNDVPTVFCESTVNDSAQRSVIRETGARMGETLYVDSL
STADGPVPTYLDLLRHDAEAIVDGLTGT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 7e-67 56
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 7e-67 56
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 5e-67 56
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-67 56
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 7e-67 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B005_4681 YP_006643740.1 periplasmic solute binding family protein BAC0349 Protein 3e-67 56
B005_4681 YP_006643740.1 periplasmic solute binding family protein BAC0439 Protein 5e-59 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B005_4681 YP_006643740.1 periplasmic solute binding family protein VFG0525 Protein 3e-67 56