Gene Information

Name : B005_4208 (B005_4208)
Accession : YP_006643269.1
Strain : Nocardiopsis alba ATCC BAA-2165
Genome accession: NC_018524
Putative virulence/resistance : Virulence
Product : ABC transporter family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4423933 - 4424745 bp
Length : 813 bp
Strand : +
Note : -

DNA sequence : 
GTGACCACGGACCGCACACTGCTCGTCGAGGACCTCACCCTCGGATACCGGGACCGGACCGTCATCGACTCCCTGGACCT
GGGCGTCCCGCCGGGGCGGATCACCGCGATCGTGGGCGCCAACGCCTGCGGCAAGTCCACCCTGCTGCGTTCGATGTCCC
GGCTCCTGTCGCCCAAGGAGGGGCGGGTGCTCCTGGACGGCCGTGAGGTCCACCGGATGCCGTCCAAGGAGCTCGCCCGC
ACGCTCGGCCTGCTCCCGCAGTCGCCGATCGCCCCCGAGGGCATCACCGTCGGCGACCTGGTCGGCCGCGGACGCCACCC
CCACCAGCGGGTCCTGTCCCGCTGGAGCCGGGAGGACGACGAGGCGGTCGCCGCCGCCCTCGACTCCACCGGGACGGCCG
ATCTCGTGGACCGGGCCGTCGACGAGCTCTCCGGCGGGCAGCGTCAACGGGTGTGGATCGCGATGGCCCTGGCCCAGCGC
ACCGACCTGCTCCTGCTCGACGAACCCACCACGTTCCTCGACGTCAGCCACCAGGTGGAGGTCCTGGACCTGCTCACCGA
CCTCAACCGCACGCTGGGCACCACTATCGTGCTGGTCCTGCACGACCTGAACCTGGCCGCCCGCTACGCCGACCACCTCG
TCGCCCTCGCCGACGGGCGTCTGTACGCCGAGGGGGAGCCGGAGCGGGTGCTCACCCCGGAGACGGTGGAGGCCGTGTTC
GGTCTGCGCAGTCGGATCATCACCGACCCCACCTCGGGGCGGCCCATGATGCTGCCGATCGGCCGGTACCACGCCTCCGT
CGAGAGCGTCTGA

Protein sequence : 
MTTDRTLLVEDLTLGYRDRTVIDSLDLGVPPGRITAIVGANACGKSTLLRSMSRLLSPKEGRVLLDGREVHRMPSKELAR
TLGLLPQSPIAPEGITVGDLVGRGRHPHQRVLSRWSREDDEAVAAALDSTGTADLVDRAVDELSGGQRQRVWIAMALAQR
TDLLLLDEPTTFLDVSHQVEVLDLLTDLNRTLGTTIVLVLHDLNLAARYADHLVALADGRLYAEGEPERVLTPETVEAVF
GLRSRIITDPTSGRPMMLPIGRYHASVESV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-56 54
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-49 50
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-61 49
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-61 49
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-51 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-51 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-51 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-51 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-45 42
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 9e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B005_4208 YP_006643269.1 ABC transporter family protein BAC0164 Protein 9e-50 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B005_4208 YP_006643269.1 ABC transporter family protein VFG0925 Protein 7e-65 53
B005_4208 YP_006643269.1 ABC transporter family protein VFG1042 Protein 8e-50 50