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Name : B005_3971 (B005_3971) Accession : YP_006643033.1 Strain : Nocardiopsis alba ATCC BAA-2165 Genome accession: NC_018524 Putative virulence/resistance : Virulence Product : sigma-54 interaction domain protein Function : - COG functional category : - COG ID : - EC number : - Position : 4159580 - 4162063 bp Length : 2484 bp Strand : - Note : - DNA sequence : ATGACGAACGACCACCCCGAGGGGCCGGGCGGCGACCCGGGTTCCTTCGACGAGTTCCTGGCCCGGTTCCTCGGCGCCCG CGGACCCGTCCGCCGCGTCGACCTGTCCAAGCTGATGAGCCCCGAGGCCCGACAGATCGCGGACACCGCGGCGCGACGCG CGCTCCAGAGCGGTGGGGCCGACATCGACTCGGTCCATCTGCTCTGGGCGCTCCTGCGCTACCCGCCCGTCCGCGAACTG GTGGAGCGCACCGACGCCGACGCCAAGCCCTTGGAGGACGTCATCGACCAGGCGGTCGCCCAGGCGCCGCGGGCGGTGCG CGGCTCCGCCCGGTTGACCCCCTCGGCCAAACGGGCCCTTCTCGATTCCCTCCAGATCGCCCGCGCCACCGGCAGCTCCG GCATCATGCCCGAGCACATCCTGTTCGCGCTCGCGATCAACCCCGACCACCCGGTCGGCCAACTGCTGCGTGACCAGGGG ATCACCCCCGAGTCGTTGCAGAAGGCGACCGGTCCCGCCTCCGGAGGAGGTCAGGTCGAGGGAGAACCCTCGCAGACACC CTCCCTGGACGAATTCGGGACCGACATGACCGCCCTGGCCCGGGAGGGTCGGCTGGACCCGGTGGTCGGCCGCGACGACG AGGTCGAACAGTGCATCGAGGTCCTGGCCCGTCGGCGCAAGAACAACCCGGTGCTCATCGGCGACCCGGGCGTGGGCAAG ACCGCGATCGTGGAGGGCATCGCCCAACGCATCTTCGACGACGACGTTCCCGAGACCCTGCGCGGACGGCGGCTGGTCCA GCTCGACGTCTCCGGGATCGTGGCGGGCACCCGCTACCGGGGCGACTTCGAGGAGCGGCTGAACAAGATCGTCGAGGAGA TCCGCGCCCAGTCCGAGAACCTGCTCATCTTCATCGACGAGATCCACACCATCGTCGGCGCCGGAGCCTCGGAGGGATCG ACCAGCGCGGGCAACATGCTCAAGCCCGCCCTGGCCCGGGGCGAGCTGCACATCATCGGCGCCACCACCGTGGACGAGTA CCGCAAGAACATCGAGAAGGACGCCGCCCTGGAGCGCCGGTTCCAACCGATCCAGGTGCCCGAGCCGTCGGTGGAGGACA CCGTCGACATCCTGCGCGGGCTGCGCGACCGTTACGAGGCGCACCACCAGGTGCGGTTCGGGGACGAGAGCCTCGTGGCC GCCGCCGAGATGTCCGACCGCTACATCACCGACCGATTCCTGCCGGACAAGGCCATCGACCTCGTGGACCAGGCCGGAGC CCGCGTCCGTCTCCGCTTGAAGACCTCCAGCTCCACCCTGCGCGAGATGGAGAAGCGGCTCAAGGACCTGGAGGGCGAGA AGGACCGCGCGGTCCAGGACGAGGACTACGAGAAGGCCTCTCGACTGCGCGACGAGATCAACGAGACCAGGAGCAGTGTC CACCAGGCGCGCGGGACCGGCTCGGCCGTCCCGGAGGTCGGTCCCGATGACATCGCCGAGGTCGTCTCTCGCGGCACCGG CATCCCGGTATCGCAGCTGACCCAGGCCGAACGCGACCGGCTCGTCAACCTGGAGGAGGTGCTGCACGACCGGGTCATCG GCCAGGACGAGGCGGTCACCGCCGTCTCGGAGGCGATCCGCCGCAACCGGGCCGGGCTCGGCGACCCGGATCGCCCCGTG GGCAGCTTCCTGTTCCTGGGCCCGACCGGCGTGGGCAAGACCGAGTTGGCGCGGGCCCTGGCCGAGGCGCTGTTCGGTTC GGAGGACTCCATGGTCCGGCTCGACATGAGCGAGTTCCAGGAGCGGCACACCGCCAGCCGGCTGACCGGCGCGCCGCCCG GATTCGTGGGATACGAGGAGGCCGGTCAGCTCACCGAGGCGGTCCGTCGCCACCCGTACTCGGTGCTGCTCCTGGACGAG ATCGAGAAGGCGCACCCGGACGTGTTCAACCTGCTGTTGCAGCTGTTGGACGACGGACGTCTGACCGACGGCCAGGGTCG CACGGTCGACTTCCGCAACACCGTGGTGATCATGACGAGCAACCTGGGTTCGGAGGCGATCACCGGGGGCGGTCCGATGG GCTTCACCGCCGACGGGCAGATGGACGCCGACACCGAACGACGGGTGATGCGCCGGCTCAGTGAGGAGTTCCGTCCCGAG TTCATCAACCGGATCGACGAGGTCATCGTCTTCCAGCAGCTCGGCGAGGAGCAGATCGACCAGATCGCCCGCCTCATGCT GGAGCGGACCGAGGAGCGGATGGCAGCCCAGGACATCTCGATCCGTTTCACCGACGAGGCGGTCCGCTGGATCTCCCGCC GCGGCTACCAACCCGAGTTCGGCGCCCGCCCTCTGGCGCGTACCATCCAGCGCAACGTGGGCAATCGGCTGTCCAGGATG GTGCTGGACCGGCAGATCGCCTCGGGCGACCGGGTCGTGGTCGACGTGGACGACGCCGGCGAGCTGGTCATCTCGACCGA GTGA Protein sequence : MTNDHPEGPGGDPGSFDEFLARFLGARGPVRRVDLSKLMSPEARQIADTAARRALQSGGADIDSVHLLWALLRYPPVREL VERTDADAKPLEDVIDQAVAQAPRAVRGSARLTPSAKRALLDSLQIARATGSSGIMPEHILFALAINPDHPVGQLLRDQG ITPESLQKATGPASGGGQVEGEPSQTPSLDEFGTDMTALAREGRLDPVVGRDDEVEQCIEVLARRRKNNPVLIGDPGVGK TAIVEGIAQRIFDDDVPETLRGRRLVQLDVSGIVAGTRYRGDFEERLNKIVEEIRAQSENLLIFIDEIHTIVGAGASEGS TSAGNMLKPALARGELHIIGATTVDEYRKNIEKDAALERRFQPIQVPEPSVEDTVDILRGLRDRYEAHHQVRFGDESLVA AAEMSDRYITDRFLPDKAIDLVDQAGARVRLRLKTSSSTLREMEKRLKDLEGEKDRAVQDEDYEKASRLRDEINETRSSV HQARGTGSAVPEVGPDDIAEVVSRGTGIPVSQLTQAERDRLVNLEEVLHDRVIGQDEAVTAVSEAIRRNRAGLGDPDRPV GSFLFLGPTGVGKTELARALAEALFGSEDSMVRLDMSEFQERHTASRLTGAPPGFVGYEEAGQLTEAVRRHPYSVLLLDE IEKAHPDVFNLLLQLLDDGRLTDGQGRTVDFRNTVVIMTSNLGSEAITGGGPMGFTADGQMDADTERRVMRRLSEEFRPE FINRIDEVIVFQQLGEEQIDQIARLMLERTEERMAAQDISIRFTDEAVRWISRRGYQPEFGARPLARTIQRNVGNRLSRM VLDRQIASGDRVVVDVDDAGELVISTE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-165 | 56 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-94 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| B005_3971 | YP_006643033.1 | sigma-54 interaction domain protein | VFG0079 | Protein | 0.0 | 53 |
| B005_3971 | YP_006643033.1 | sigma-54 interaction domain protein | VFG0080 | Protein | 8e-146 | 50 |
