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Name : B005_2579 (B005_2579) Accession : YP_006641668.1 Strain : Nocardiopsis alba ATCC BAA-2165 Genome accession: NC_018524 Putative virulence/resistance : Virulence Product : sigma-54 interaction domain protein Function : - COG functional category : - COG ID : - EC number : - Position : 2688825 - 2691266 bp Length : 2442 bp Strand : + Note : - DNA sequence : ATGCTCAACCACAACTACATCGGTACGGAGCACATCCTGCTCGGCCTCATCCACGAGGGTGAGGGTGTCGCCGCCAAGGC CCTGGAGAGTCTTGGTATCAGCCTCGAAGCGGTTCGGCAGCAGGTCGAGGAGATCATCGGCCAGGGCCAGCAGGCTCCGT CGGGGCACATTCCCTTCACCCCGCGGGCCAAGAAGGTCCTTGAGTTGTCGCTGCGCGAGGCGTTGCAGCTCGGCCACAAC TACATCGGTACCGAGCACATCCTGCTGGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCGTCAAGCTGGG CGCCGACCTCAACCGGGTCCGCCAGCAGGTCATCCAGCTGCTGCACGGCTACCAGGGCAAGGAGCCGCAGGCCACCGGCG CCTCCTCCGAGTCCACCCCTTCCACTTCGCTGGTGCTGGACCAGTTCGGCCGCAACCTGACGCAGGCCGCGCGTGAGTCC AAGCTCGACCCTGTCATCGGTCGTGACAAGGAGATCGAGCGGGTCATGCAGGTCCTGTCCCGCAGGACCAAGAACAACCC GGTCCTGATCGGTGAGCCCGGCGTCGGTAAGACCGCCGTCGTCGAGGGCCTCGCGCAGAAGATCGTCAAGGGTGAGATCC CCGAGACCCTCAAGGACAAGCAGCTCTACACGCTGGACCTCGGTGCCCTGGTCGCGGGCAGCCGCTACCGCGGTGACTTC GAGGAGCGCCTCAAGAAGGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTCTTCATCGACGAGCTGCACACGCT GGTCGGAGCGGGCGCGGCGGAAGGTGCCATAGACGCCGCCTCCATCCTGAAGCCCATGCTGGCCCGGGGTGAGCTCCAGA CCATCGGCGCCACCACGCTCGACGAGTACCGCAAGTACCTGGAGAAGGACGCCGCGCTGGAGCGCCGCTTCCAGCCGATC CAGGTGGACGAGCCGACGATCACGCACGCCATCGAGATCCTCAAGGGTCTGCGCGACCGTTACGAGGCCCACCACCGCGT CTCGATCACCGACAGTGCCCTCGTCGCCGCCGCGCAGCTCGCGGACCGCTACATCAGCGACCGCTTCCTGCCCGACAAGG CCATCGACCTCATCGACGAGGCCGGTTCGCGGATGCGCATCCGTCGGATGACCGCGCCGCCGGACCTGCGCGAGTTCGAC GACAAGATCGCCAAGGTGCGCCGGGACAAGGAATCGGCCATCGACGAGCAGGACTTCGAGAAGGCCGCGTCCCTGCGCGA CGACGAGAAGCAGCTGCTCAACAAGAAGGCGCAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGG TCGACGAGGAGCTCATCGCCGAGGTCCTGGCCGCCTCCACCGGTATCCCGGTCTTCAAGCTGACCGAGGAGGAGAGCTCC CGCCTGCTGCGCATGGAGGACGAGCTCCACCGTCGGGTCATCGGCCAGGAGGACGCCATCAAGGCGCTCTCGCAGGCCAT CCGCCGTACCCGCGCCGGTCTGAAGGACCCCAAGCGTCCCGGTGGCTCGTTCATCTTCGCCGGTCCGTCCGGTGTGGGTA AGACCGAGCTGTCCAAGACCCTCGCGGAGTTCCTCTTCGGGGACGAGGACGCGCTGATCCAGCTCGACATGTCCGAGTTC ATGGAGAAGCACACCGTCTCGCGTCTGTTCGGTTCGCCTCCCGGCTACGTCGGCTACGAAGAGGGCGGCCAGCTCACCGA GAAGGTGCGCCGCAAGCCGTTCTCCGTGGTCCTCTTCGACGAGATCGAAAAGGCCCACAACGACATCTTCAACTCGCTCC TACAGGTGCTGGAGGAGGGTCGTCTCACCGACGCCCAGGGTCGCAACGTCGACTTCAAGAACACGGTCATCATCATGACG ACCAACCTGGGTACGCGGGACATCTCCAAGGGTGTGGCCATGGGCTTCGCCAAGGAGGACGACGCCAACACCAACTACGA GCGGATGAAGGCCAAGGTCAGCGAGGAGCTCAAGACCAACTTCCGGCCCGAGTTCCTCAACCGTGTGGACGACGTCATCG TCTTCCACCAGCTGACGGAGAAGGAGATCTTCCAGATCGTCGACCTGATGATCGCGAACCTGGACAGCAGGCTCAAGGAG AAGGACATGGGCATCGAGCTTCGGCCGAACGCCAAGAAGGTCCTCTCCGAGCGCGGCTTCGACCCGGTTCTGGGCGCGCG GCCGCTGCGTCGCACGATCCAGCGGGAGATCGAGGACCAGCTGTCCGAGAAGATCCTGTTCGGAGACCTCAAGGCCGGCC AGATCGTCGTGATCGACGCCGAGGGCGAGGGTACGGACGCCAAGTTCACCTTCAAGGGTGTTCCGAAGCCCGCCGAGGTG CCGGACACCCCCGAGGTGGAGTCCGCCGCCCAGGGCGAGTGA Protein sequence : MLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHN YIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLHGYQGKEPQATGASSESTPSTSLVLDQFGRNLTQAARES KLDPVIGRDKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIVKGEIPETLKDKQLYTLDLGALVAGSRYRGDF EERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGATTLDEYRKYLEKDAALERRFQPI QVDEPTITHAIEILKGLRDRYEAHHRVSITDSALVAAAQLADRYISDRFLPDKAIDLIDEAGSRMRIRRMTAPPDLREFD DKIAKVRRDKESAIDEQDFEKAASLRDDEKQLLNKKAQREKEWKAGDMDVVAEVDEELIAEVLAASTGIPVFKLTEEESS RLLRMEDELHRRVIGQEDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSKTLAEFLFGDEDALIQLDMSEF MEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHNDIFNSLLQVLEEGRLTDAQGRNVDFKNTVIIMT TNLGTRDISKGVAMGFAKEDDANTNYERMKAKVSEELKTNFRPEFLNRVDDVIVFHQLTEKEIFQIVDLMIANLDSRLKE KDMGIELRPNAKKVLSERGFDPVLGARPLRRTIQREIEDQLSEKILFGDLKAGQIVVIDAEGEGTDAKFTFKGVPKPAEV PDTPEVESAAQGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 75 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-95 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| B005_2579 | YP_006641668.1 | sigma-54 interaction domain protein | VFG0079 | Protein | 0.0 | 62 |
| B005_2579 | YP_006641668.1 | sigma-54 interaction domain protein | VFG0080 | Protein | 1e-153 | 50 |
