Gene Information

Name : A79E_4509 (A79E_4509)
Accession : YP_006638268.1
Strain : Klebsiella pneumoniae 1084
Genome accession: NC_018522
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4785599 - 4787281 bp
Length : 1683 bp
Strand : -
Note : -

DNA sequence : 
ATGGCGCTTACAGATCTCGCAATCCGGCATGCCAGGCCGCTTGGCAAGGCATACAGGCTCTCTGACTGTCACGGTCTTTA
CATTCAGGTTAACCCCAGCGGATCTAAGCTGTGGTATCTGAAATTTCGCTTTGGAAACAAAGAGAACCGTATGGCATTAG
GCCCTTATCCGCTTATTTCTCTCGCACTGGCAAGGGAGAAGCAAGCGGATATAAGAAGGCTTATTTTAGAAGGCATTAAT
CCGGCGGAAAAACGCAGAGAGGAAAAGCGGGGTGGAGAGCCCCTTTATACGTTCGAGTCCGTGGCGCGCGAATGGGTCTC
CAGCAACGTCAACTGGTCGGCGGAACATAAGAAGCGGGTGCTGCGTTATTTCGAGCTTTACGTATTCCCCACGAACGGCA
GCTGGGATATTACCAAAATGAAGGTCAAAGACCTGCTGGTACCCATCAAAGAGGTGGAGAAAGCGGGCAAACTGGACGTA
GCTTCCCGGCTTCAGCAACGTACCGCTTGCGTGATGCGCTATGCCGTCCAGAACGGCATTATCGATCATAACCCCGCATC
AGATTTAACCGGCGCGGTCTCCACGCCCAAAGTACGTCATCACCCGGCGCTGGATCTGAATCTTATCCCTGATTTTCTGG
AAAGAGTCGACGACTTCAAAGGACGTAAGCTGACACAACTGGCGGTAAAGCTGGCGTTGTTATTATTCATCCGCTCCAGC
GAACTGCGCTTTGCCCGCTGGGATGAGATAGACCTGCATAACGCCATGTGGACCATTCCCGCCGAGCGTGAACCGATCCC
CGGCGTTAAATACTCTGCGCGTGGCGCGAAGATGCGATCTCCACACCTGGTACCTCTGTCACATCAGGCCATCGAACTGC
TGCGCGAGGTGCGGCAGCATTGCCGACCGGGAACTGAACTGGTGTTCCCCGGCGACCACAATTACCGCAAACCGATGAGT
GAAAACACCATTAACAAAGCGCTGCGGGTGATGGGCTACGACACCCAGAAAGATGTCTGTGGCCACGGGTTTCGCACCAT
GGCCTGTAGCGCGCTGGTGGAGTCGGGCCTGTGGTCAAGCGACGCGGTAGAGCGCCAGATGAGCCATCAGGAGCGCAAGC
GCGTTCGTGCGGCGTATATCCATAAGGCGCAGCATCTCGAAGAACGCCGGGAAATGATGCAGTGGTGGGCGGATTATCTG
GATGCGAACCGCTTCAGGCATGTGGTGCCGTATGGCTTCAAAAAATCGCCGGGAGGCGCACTCGACCATATGAGCTTCCA
GGAGCGTAATGACCGACAAGTGGAGGAGCTGAAAGCCCGGATACTGGCTGACTCGGAATGGCTGACGGCGTCTGAGTTAT
CGGCAAAAGCGGGTTTTCGTTCTGCCGATCCTGAAGCTGGCCCGAAAGGCTGGAAAGCCGCAGGTAAGATTTTCTCGCTG
AAGGTCGACGGGGAGGATTTGTACCCGGATTATGTTCTGGATGAGAAAATGCGACCTCTCAAGGTTGTCAGGCTTATTCT
TTCGCTGTTCAAAGAGCGTAAAACGCCGTGGGGGCTAGCTATCTGGTTTGGCTCGGCAAACCGCAGGTTGAGAGGTGGGA
AGCCGAAAGATCTGCTGATTTCAAAGTCAGAGTTGGTTCTGATGGTTGCCCAAGAGGAAATTGAGATGAGGGAGCATGGG
TGA

Protein sequence : 
MALTDLAIRHARPLGKAYRLSDCHGLYIQVNPSGSKLWYLKFRFGNKENRMALGPYPLISLALAREKQADIRRLILEGIN
PAEKRREEKRGGEPLYTFESVAREWVSSNVNWSAEHKKRVLRYFELYVFPTNGSWDITKMKVKDLLVPIKEVEKAGKLDV
ASRLQQRTACVMRYAVQNGIIDHNPASDLTGAVSTPKVRHHPALDLNLIPDFLERVDDFKGRKLTQLAVKLALLLFIRSS
ELRFARWDEIDLHNAMWTIPAEREPIPGVKYSARGAKMRSPHLVPLSHQAIELLREVRQHCRPGTELVFPGDHNYRKPMS
ENTINKALRVMGYDTQKDVCGHGFRTMACSALVESGLWSSDAVERQMSHQERKRVRAAYIHKAQHLEERREMMQWWADYL
DANRFRHVVPYGFKKSPGGALDHMSFQERNDRQVEELKARILADSEWLTASELSAKAGFRSADPEAGPKGWKAAGKIFSL
KVDGEDLYPDYVLDEKMRPLKVVRLILSLFKERKTPWGLAIWFGSANRRLRGGKPKDLLISKSELVLMVAQEEIEMREHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 6e-117 59
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 6e-117 59
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 6e-110 59
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-111 58
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-111 58
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-111 58
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-111 58
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-111 58
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 8e-112 58
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-110 58
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-111 58
int AAL51003.1 CP4-like integrase Not tested LEE Protein 5e-111 58
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-111 58
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-109 58
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-111 58
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-111 58
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-111 58
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-110 58
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-110 58
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-111 58
int AAK16198.1 Int Not tested PAI-I AL862 Protein 8e-112 58
int CAA08754.1 integrase Not tested HPI Protein 1e-98 54
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 1e-109 54
int YP_002346908.1 integrase Not tested HPI Protein 4e-98 53
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 4e-98 53
int2 NP_993013.1 integrase Not tested HPI Protein 4e-98 53
int CAA21384.1 - Not tested HPI Protein 4e-98 53
int CAB59974.1 integrase Not tested HPI Protein 2e-98 53
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 4e-103 52
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 4e-103 52
unnamed AAD17660.1 unknown Not tested HPI Protein 1e-95 52
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 5e-87 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A79E_4509 YP_006638268.1 integrase VFG0626 Protein 1e-111 58
A79E_4509 YP_006638268.1 integrase VFG1693 Protein 7e-111 58