Gene Information

Name : A79E_4468 (A79E_4468)
Accession : YP_006638228.1
Strain : Klebsiella pneumoniae 1084
Genome accession: NC_018522
Putative virulence/resistance : Unknown
Product : type IV secretory pathway, VirD4 component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4735973 - 4737991 bp
Length : 2019 bp
Strand : +
Note : -

DNA sequence :
ATGAGCCGCTACGCCCTGGAGGCGCTGCTGCGCCCACCCGTGGAGTTTTACAGCACCGTCACCGCTGGCTGTGGCGCATT
AATCTGCCTGACGCAGGCCCCACTGCTGATGCTGACGCTATGGCAGGCCCGCCTGATGGCCAGCGCCCTGATGCTGCTGG
CCCTCCGACGCGGCTGGCAGGGCTGGCACATCGTGCGCTACCACCGCAACCTCCTGTGCCTGCCGCGCTACGCGCTCACC
AGCCGGAAAATCCCGGTCAGCCGCCAGCGGCTGTTTCTCGGTAAAGGCTTTCGCTGGCTGCCCATCCACACCCAACGGCT
GTACGACTGCCTGCAACCGGAAGCCGCACGCTGGCTGCGCCCCGGAGGGTGTTATCGCCTGGCAAGGCATATCGAAAAAC
GCGCCGAACATACTCTTCCCCGTCTTACCCGGCTGCTCAGCGCCGATCGCTGGCTGAATCCGGTGCGCCCACTGCCGCCC
GTTGGCGGCAATCCGTGGCTGCACGGGGTGGAGCTGAAAGAGTGCGACGTCACCCTGCCGCTCAGTGAACGCCCCGGCCA
CACGCTGGTGCTCGGCACCACCCGCGTCGGCAAAACCCGGCTGGCGGAACTGCTTGCCACTCAGGACATCCGCCGTGGTG
AGGTGGTAATCGTTTTCGATCCGAAAGGCGACGCGGATCTACTGAAGCGTCTGTGGACAGAGGCGCAGCGCGCCGGACGC
GGCGACCGCTTTATCCTGTTCCATCTGGCCTACCCAAAGATCTCCGCCCGCTACAACGCGATAGGGCGCTTTGGCCGCAT
CTCGGAAGTGGCATCGCGCCTCACCGGACAGCTTTCCGGCGAAGGTAACTCGGCAGCCTTCCGCGAGTTCGCCTGGCGCT
TTGTCAACATCATCGCCCGCGCCCTGGTGGCGCTCGGACAGCGCCCCGACTATCAGTTAATTTCCCGCCACGTGGTCAAT
ATCGACGCCCTGTTTATCGACTATGCCCGCATCGTGCTGCCGCGCCACAACGCTCGGGCGTGGGAAGTGGTGGCGCAACT
GGCGGAGCGCGTTAACGACAAAAACACGCCGCGCCATATGCTGGGACGCGATCCTCACGTAGTGGCGCTGGAACAGTACC
TCAACGCGGAGAAATTCTACGATCCGATCCTCGACGGTCTGCTCTCGGCGGTGCGCTATGACAAAACCTACTTCGACAAG
ATTGTCGCTTCGCTGCTGCCGCTGCTGGAAAAGCTGACCACCGGTACGCTCGCCGCCCTGCTCGCCCCGGACTACCACGA
TCTGGATGATGCACGCCCGATCCTCGACTGGCAGCAGGCGATCCGTCAGAAAGCAGTGGTGTATGTCGGACTGGATGCGC
TGTCTGATGCGGTGGTTGCTGCCGCCGCCGGCAATTCCATGTTTGCCGACCTGGTGAGCGTTGCCGGGCATCTCTATAAA
TTTGGCCTCAATGATGGACTGCCCGGCAATAGCGAAAAACCGTCGCCTGTCAACCTGCACTGCGATGAGTTTAATGAACT
GATGGGGGAGGAGTTTATCCCGCTGGTCAACAAGGGTGGCGGCGCGGGCATTCAGGTCACCGCCTACACCCAGACGCTGA
GTGATATTCAGGCCCGCATCGGCAGCGCCCCCAAGGCAGGCCAGGTGGTGGGTAACTTTAATAACCTGATTATGCTGCGG
GTGTGCGAAACCGCCACCGCCGAACTGCTGACGAAGCAACTGCCGCAGGTGGAAGTGCGCAGCCGTCAGGTTAGCTCCGG
CGTCACCGACACGCCGGGCGGCATCAACAGCTTCAGCAGCAACACACGCGAGCAGGTAGTTACCCGCAATGTACCGCTGC
TGGATACCGCCGCGCTGATCCAGCTTCCCAAAGGTCAGGCTTTTGCTCTACTTGAGGGTGGACAGTTGTGGAAAATTCGT
CTGCCACTGCCCGTGGCGGATAAACCCTGCCCACTACCGGAGTCCGTCGCACAACTGGCGGCCTGGATGCAGACGCGCCA
GCAGGGACAGGCGGAATGA

Protein sequence :
MSRYALEALLRPPVEFYSTVTAGCGALICLTQAPLLMLTLWQARLMASALMLLALRRGWQGWHIVRYHRNLLCLPRYALT
SRKIPVSRQRLFLGKGFRWLPIHTQRLYDCLQPEAARWLRPGGCYRLARHIEKRAEHTLPRLTRLLSADRWLNPVRPLPP
VGGNPWLHGVELKECDVTLPLSERPGHTLVLGTTRVGKTRLAELLATQDIRRGEVVIVFDPKGDADLLKRLWTEAQRAGR
GDRFILFHLAYPKISARYNAIGRFGRISEVASRLTGQLSGEGNSAAFREFAWRFVNIIARALVALGQRPDYQLISRHVVN
IDALFIDYARIVLPRHNARAWEVVAQLAERVNDKNTPRHMLGRDPHVVALEQYLNAEKFYDPILDGLLSAVRYDKTYFDK
IVASLLPLLEKLTTGTLAALLAPDYHDLDDARPILDWQQAIRQKAVVYVGLDALSDAVVAAAAGNSMFADLVSVAGHLYK
FGLNDGLPGNSEKPSPVNLHCDEFNELMGEEFIPLVNKGGGAGIQVTAYTQTLSDIQARIGSAPKAGQVVGNFNNLIMLR
VCETATAELLTKQLPQVEVRSRQVSSGVTDTPGGINSFSSNTREQVVTRNVPLLDTAALIQLPKGQAFALLEGGQLWKIR
LPLPVADKPCPLPESVAQLAAWMQTRQQGQAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG68 AAN62290.1 conserved hypothetical protein Not tested PAGI-3(SG) Protein 6e-180 66
ORF C65 AAN62159.1 conserved hypothetical protein Not tested PAGI-2(C) Protein 5e-180 62
api27 CAF28501.1 hypothetical protein Not tested YAPI Protein 1e-172 60
YE3493 YP_001007651.1 TraG-family protein Not tested YAPI Protein 2e-172 60
YpsIP31758_3718 YP_001402672.1 hypothetical protein Not tested YAPI Protein 1e-173 60
PMI2588 YP_002152307.1 plasmid transfer protein Not tested Not named Protein 3e-162 60
STY4562 NP_458648.1 hypothetical protein Not tested SPI-7 Protein 4e-170 59
t4260 NP_807858.1 hypothetical protein Not tested SPI-7 Protein 4e-170 59
traG CAI36113.1 putative TraG family conjugative protein Not tested PPHGI-1 Protein 8e-168 59
Pmu_03190 YP_005176218.1 conjugal transfer protein TraD Not tested ICEPmu1 Protein 5e-164 58
RL047 AAP84173.1 conserved hypothetical protein Not tested PAPI-1 Protein 4e-162 57
EXA47 ABD94656.1 TraG/TraD family protein Not tested ExoU island A Protein 2e-163 57
unnamed ABR13375.1 hypothetical protein Not tested PAGI-5 Protein 7e-164 57
traD AAW83057.1 TraD Not tested GGI Protein 3e-126 50