Gene Information

Name : A79E_1016 (A79E_1016)
Accession : YP_006634845.1
Strain : Klebsiella pneumoniae 1084
Genome accession: NC_018522
Putative virulence/resistance : Virulence
Product : manganese ABC transporter, inner membrane permease protein SitC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1041948 - 1042796 bp
Length : 849 bp
Strand : -
Note : -

DNA sequence : 
ATGAGCTGGCTGCTGGAGCCGTTTGGCTATCACTATATGCTCAATGCGATGTGGGTGTCGGCGCTGGTGGGCGGCGTCTG
TGCGTTTCTCTCCTGCTACCTGATGCTCAAAGGCTGGTCGCTGATTGGCGACGCCCTCTCCCACTCGATTGTACCCGGCG
TCGCCGGGGCCTATATGCTCGGCCTGCCTTTCGCGCTCGGCGCATTTCTCTCCGGCGGTCTGGCGGCGGGCAGCATGCTG
TTTTTGCAACAGCGCTCGCGGCTAAAAGAGGATGCCATTATCGGGCTGATCTTCTCCTCCTTCTTCGGGATCGGGCTGTT
TATGGTGTCGCTGAATCCGACGTCGGTGAATATTCAGACCATTATCCTCGGCAATATTCTGGCCATCGCCCCGGAGGATA
TTATCCAGCTGGCGGCGATCGGCTTTATCTCAATGGCGATTCTGCTGCTGAAATGGAAAGACCTGATGGTGACCTTCTTT
GATGAACACCATGCCCGCTCGATTGGCCTGAACACCCGCGGCCTGAAGCTGCTGTTCTTTACCCTGCTGGCCGCCTGCAC
CGTGGCGGCGCTGCAGACCGTCGGCGCCTTTCTGGTCATCTGCCTGGTGGTCACTCCCGGGGCTACCGCGTGGCTGTTAA
CCGATCGCTTCCCGCGCCTGCTGGCTATCGCCGTGTCTATCGGCAGCCTGACCAGTTTCTTCGGCGCCTGGCTCAGCTAC
TATCTCGACGGCGCCACCGGCGGCATTATCGTGGTCGCGCAAACGCTGCTGTTCCTCATCACCTTTATCTTCGCGCCGAA
GCACGGCCTGCTGCCCAGCCGCCGCCGCGCCAGGGAGGCCGCATGCTGA

Protein sequence : 
MSWLLEPFGYHYMLNAMWVSALVGGVCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFALGAFLSGGLAAGSML
FLQQRSRLKEDAIIGLIFSSFFGIGLFMVSLNPTSVNIQTIILGNILAIAPEDIIQLAAIGFISMAILLLKWKDLMVTFF
DEHHARSIGLNTRGLKLLFFTLLAACTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLAIAVSIGSLTSFFGAWLSY
YLDGATGGIIVVAQTLLFLITFIFAPKHGLLPSRRRAREAAC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-87 86
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-87 86
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-87 86
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-87 86
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-87 86
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-36 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-35 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-35 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-35 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A79E_1016 YP_006634845.1 manganese ABC transporter, inner membrane permease protein SitC BAC0351 Protein 2e-87 86
A79E_1016 YP_006634845.1 manganese ABC transporter, inner membrane permease protein SitC BAC0441 Protein 1e-68 68
A79E_1016 YP_006634845.1 manganese ABC transporter, inner membrane permease protein SitC BAC0352 Protein 4e-36 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A79E_1016 YP_006634845.1 manganese ABC transporter, inner membrane permease protein SitC VFG0527 Protein 1e-87 86
A79E_1016 YP_006634845.1 manganese ABC transporter, inner membrane permease protein SitC VFG0528 Protein 4e-36 42