Gene Information

Name : A79E_1015 (A79E_1015)
Accession : YP_006634844.1
Strain : Klebsiella pneumoniae 1084
Genome accession: NC_018522
Putative virulence/resistance : Virulence
Product : manganese ABC transporter, inner membrane permease protein SitD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1041100 - 1041954 bp
Length : 855 bp
Strand : -
Note : -

DNA sequence :
ATGCTGAACCTGTTCCTGGCCCCGTTCCAGTTTCCTTTTATGGTCAATGCGATAGCGATATCGATCGTCGTCGCCATTCC
CTGCGCGCTGCTGTCGGTGTTTCTGGTGCTCAAAGGCTGGGCGCTGATGGGCGACGCCATGAGCCACGCGGTCTTTCCGG
GCGTGGTGCTGGCCTACATTATCGGCATCCCCTTCGCCATCGGCGCGTTTATCGCCGGTCTGCTGTGCGCCGTGACGACC
GGTTTTCTCGACGATAACAGCCGACTCAAGCGCGATACCATCATGGGGATTGTCTTCTCCGGCATGTTTGGCGCCGGACT
GGTGCTGTACGTAGCGATCCAGTCCGATGTTCATCTCGACCATATCCTGTTCGGCGATATGCTGGGAATATCCCTCCGCG
ATATTGGGCAAACGACGGCGATCGCACTGGTGATTGCGTTGATTATCGGTCTCAAATGGCGGGATTTTTTGCTGCACGCC
TTCGATCCAACGCAGGCTAAAGCCAGCGGCCTGCGCGGCGGACTGCTGCACTACGGCCTGCTGTGCATGATCGCCCTGAC
CATCGTCGCGACGCTGCAGTCGGTGGGGATTATTCTGTCGATTTCGCTGCTGATTGCCCCCGGGGCGATCGCGCTTCTGC
TGGTGAGACGCTTTATCCACGCCCTGCTGCTGGCGGTAGCGGTGGCCATCGGCTGCTCGGCGGGAGGGGTGTGGCTGGCG
TTTTATCTCGACAGCGCGCCAGCGCCGACTATCGTGGTGCTGTTTACCGCGCTGTTTGTAGTCGCCTTTGTCGCAAGCAC
GATCCGCGATAGTCAGAAACAGAAAACTTCAGCAATTATCCCCGGTGGCGGCTAA

Protein sequence :
MLNLFLAPFQFPFMVNAIAISIVVAIPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAYIIGIPFAIGAFIAGLLCAVTT
GFLDDNSRLKRDTIMGIVFSGMFGAGLVLYVAIQSDVHLDHILFGDMLGISLRDIGQTTAIALVIALIIGLKWRDFLLHA
FDPTQAKASGLRGGLLHYGLLCMIALTIVATLQSVGIILSISLLIAPGAIALLLVRRFIHALLLAVAVAIGCSAGGVWLA
FYLDSAPAPTIVVLFTALFVVAFVASTIRDSQKQKTSAIIPGGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-58 81
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-58 81
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-58 81
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-58 81
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-58 81
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-18 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-18 41
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-18 41
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-18 41
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-18 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A79E_1015 YP_006634844.1 manganese ABC transporter, inner membrane permease protein SitD BAC0352 Protein 2e-58 81
A79E_1015 YP_006634844.1 manganese ABC transporter, inner membrane permease protein SitD BAC0442 Protein 9e-38 52
A79E_1015 YP_006634844.1 manganese ABC transporter, inner membrane permease protein SitD BAC0441 Protein 3e-21 43
A79E_1015 YP_006634844.1 manganese ABC transporter, inner membrane permease protein SitD BAC0351 Protein 8e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A79E_1015 YP_006634844.1 manganese ABC transporter, inner membrane permease protein SitD VFG0528 Protein 2e-58 81
A79E_1015 YP_006634844.1 manganese ABC transporter, inner membrane permease protein SitD VFG0527 Protein 7e-19 41