Gene Information

Name : BN118_0523 (BN118_0523)
Accession : YP_006625263.1
Strain : Bordetella pertussis 18323
Genome accession: NC_018518
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 558334 - 559011 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence : 
ATGTGCATCCTCGTTATCGAAGACGAGCCCAAGCTGGCCGACTATCTGCACAAGGGCCTGTCCGAGCAAAGCCATATCGT
CGACGTCGCGCGCGACGGCGTCAACGGCCGCCACCTGGCGCTCGAGGGCGACTACGAACTGGTCATCCTCGACGTGATGC
TGCCCGACATCGACGGCTTCGCCGTCCTGGCGGCGCTGCGCGCGGCCGCGCGCAACACGCCGGTGCTGATGCTGACGGCG
CGCGACCGGGTCGAGGACCGCGTGCGCGGGCTGGAAGGCGGCGCCGACGACTACCTGGTCAAGCCGTTCGCGTTCTCCGA
GCTCCTGGCGCGCGTGCATGCGCTGCAGCGGCGCGGGCGCAGCCAGGAATCCACCCTGCTGCGCCTGGCCGACCTCGAGC
TGGACCTGGCCAGCCGCAAGGCGCAGCGCGGCGGACGCCGCCTGGACCTGACGGCCAAGGAGTTTTCGCTGCTGGCGCTG
CTGCTGCGCCGCCAGGGCCAGATCCTGTCGCGCACCACGCTGGCCGAGCAGGTCTGGGACATGAACTTCGACAGCGACAC
CAACGTCATCGACGTCGCCATCCGCCGGCTGCGCGGCAAGCTGGACGACCCCTACGACGCCAAGCTGCTGCATACCGTGC
GCGGCATGGGCTACGTGCTGGAATCGCGCCCGTCATGA

Protein sequence : 
MCILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDYELVILDVMLPDIDGFAVLAALRAAARNTPVLMLTA
RDRVEDRVRGLEGGADDYLVKPFAFSELLARVHALQRRGRSQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLAL
LLRRQGQILSRTTLAEQVWDMNFDSDTNVIDVAIRRLRGKLDDPYDAKLLHTVRGMGYVLESRPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-46 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-46 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BN118_0523 YP_006625263.1 two-component response regulator BAC0197 Protein 1e-53 64
BN118_0523 YP_006625263.1 two-component response regulator BAC0083 Protein 1e-53 61
BN118_0523 YP_006625263.1 two-component response regulator BAC0125 Protein 2e-54 61
BN118_0523 YP_006625263.1 two-component response regulator BAC0638 Protein 1e-46 59
BN118_0523 YP_006625263.1 two-component response regulator BAC0111 Protein 4e-55 57
BN118_0523 YP_006625263.1 two-component response regulator BAC0308 Protein 9e-51 54
BN118_0523 YP_006625263.1 two-component response regulator BAC0347 Protein 2e-47 50
BN118_0523 YP_006625263.1 two-component response regulator AE000516.2.gene3505. Protein 3e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BN118_0523 YP_006625263.1 two-component response regulator VFG0596 Protein 6e-47 55
BN118_0523 YP_006625263.1 two-component response regulator VFG1389 Protein 5e-29 44
BN118_0523 YP_006625263.1 two-component response regulator VFG1390 Protein 5e-34 41