Gene Information

Name : Desmer_4273 (Desmer_4273)
Accession : YP_006623964.1
Strain : Desulfosporosinus meridiei DSM 13257
Genome accession: NC_018515
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4464832 - 4465518 bp
Length : 687 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGAAGATTGTTTTAGTCGATGATGAACCGGAAATTCTAACCCTCGTGAGGGATTACCTCTCGCGGGAAGGATATAACGC
CCTAACTGCAGTCAATGGAGTAGAAGGGATGGAGCTTATCGAACGGGAAAAGCCGGATCTTGTCTTGCTGGATTGGATGC
TTCCGGGAATAAGTGGGCTGGACATGTGCAAACGTTTGCGTGAAACCAGTACCATACCGATTATCATGCTGACGGCAAAA
TCCGAGGAAATTGATCGAGTTCTTGGCTTAGAGTTTGGTGCTGACGACTATATTGTTAAACCATTTAGCCTTCGGGAATT
AGTCGCTCGAATCAAAACTGTACTTCGCCGCTCATCAGGGGGTTCACAGGAATACACCTCTTCAGTAATAATTCGAGGAG
AGATTAGCTTAGACGTCTCCAGTCATAAGGTCTTAAAGCGGGGGCAGGAAGTCCTTCTAACGCCTACAGAATTTAACATA
CTGCATTTACTTGCTACACGCCCGGGAACTGTCTACAGTCGTCTGCAGCTTTTACGGCAGGCCATGGGGGAAGAATATCT
TTACTATGAACGCTCCATTGATACCCACGTCTCCAACCTGCGTAAGAAAATTGAGGACAACCCCAGCGAGCCAAAGTATA
TTGAAACCGTTTTTGGCGTGGGCTATCGGTTTGGTGAAGACTTGTGA

Protein sequence :
MKIVLVDDEPEILTLVRDYLSREGYNALTAVNGVEGMELIEREKPDLVLLDWMLPGISGLDMCKRLRETSTIPIIMLTAK
SEEIDRVLGLEFGADDYIVKPFSLRELVARIKTVLRRSSGGSQEYTSSVIIRGEISLDVSSHKVLKRGQEVLLTPTEFNI
LHLLATRPGTVYSRLQLLRQAMGEEYLYYERSIDTHVSNLRKKIEDNPSEPKYIETVFGVGYRFGEDL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-40 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-40 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 3e-38 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 3e-38 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 4e-38 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 4e-38 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 3e-38 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 4e-38 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 4e-38 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 4e-38 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 4e-38 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 5e-38 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 4e-38 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0039 Protein 1e-40 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000034.1.gene2186. Protein 1e-40 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002695.1.916589.p Protein 8e-41 45
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP004022.1.gene1676. Protein 3e-37 44
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_014475.1.orf0.gen Protein 1e-40 44
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_005054.2598277.p0 Protein 1e-40 44
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 7e-40 44
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000034.1.gene3671. Protein 2e-43 44
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0596 Protein 1e-39 44
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001138.1.gene2239. Protein 1e-39 44
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 9e-38 43
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AM180355.1.gene1830. Protein 3e-37 43
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001918.1.gene3444. Protein 6e-40 43
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000647.1.gene2531. Protein 1e-40 43
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001918.1.gene5135. Protein 2e-27 43
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF130997.1.orf0.gene Protein 4e-34 42
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE016830.1.gene1681. Protein 4e-36 42
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0533 Protein 8e-32 42
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF162694.1.orf4.gene Protein 1e-34 42
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000647.1.gene4257. Protein 8e-32 42
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001138.1.gene4273. Protein 8e-32 42
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001485.1.gene721.p Protein 4e-34 42
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_011595.7057856.p0 Protein 2e-40 41
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010410.6002989.p0 Protein 2e-40 41
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010400.5986590.p0 Protein 1e-39 41
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000675.2.gene1535. Protein 1e-35 41
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002695.1.915041.p Protein 4e-31 41
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000034.1.gene3834. Protein 4e-31 41
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 4e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 7e-41 42
Desmer_4273 YP_006623964.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 9e-41 41