Gene Information

Name : Desmer_4172 (Desmer_4172)
Accession : YP_006623871.1
Strain : Desulfosporosinus meridiei DSM 13257
Genome accession: NC_018515
Putative virulence/resistance : Virulence
Product : capsular exopolysaccharide biosynthesis protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4353571 - 4354272 bp
Length : 702 bp
Strand : -
Note : PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family

DNA sequence : 
TTGGCTTTTTCATTAATAACGCACGAACAAACGAAATCCCCCATCTCAGAAGCTTACCGGACGCTCAGGACGAATGTACA
ATTCACTAGTGTGGATACAAAGACCAAAAAAATCATGATCACAAGTTCAGGCCCCCGGGAAGGGAAATCCACCACCGTTG
CCAACCTGGCAGTGAGTATAGCACAGTCAGGAAAATCCGTCTTAGTGATAGACGCTGATTTGCGTAATCCCACCCAACAT
AAATTATTTGAACTGAGAAATCATGAGGGCCTTTCAACCTTTTTGGTTCAGGATGATCAGGAGAAAGACTTTATCAAGGA
AACCCCTGTACTCGGCGTCAAAGTCCTCACCGGAGGCCCTATTCCCCCGAATCCCGCTGAGCTCGTAGGCTCCCAGCGGA
TGAGGCGTTTGATCGAGGAAGTCAGTGAACAATTTGATGTGGTCTTGATCGATACCCCTCCCATCATTGCCGTGACGGAT
GCCGCCGTTCTGGCTCAGGAAGTCGATGGAGTCATCTTGGTGTTAGCTTCCGGAGAAGTCAACAAAGAATACGCTCAACG
GGCCAAGGAACAATTGGACAAGGTAGGGGCTAAGATCCTTGGAGCAGTAATCAATAAGGCAGACCTGAAGACCAGCGAAT
ACTACTACTACTATTACTATCATGGCTCAGACGATCCCAAGAAAAAGAAAAAGAAGTCCTAA

Protein sequence : 
MAFSLITHEQTKSPISEAYRTLRTNVQFTSVDTKTKKIMITSSGPREGKSTTVANLAVSIAQSGKSVLVIDADLRNPTQH
KLFELRNHEGLSTFLVQDDQEKDFIKETPVLGVKVLTGGPIPPNPAELVGSQRMRRLIEEVSEQFDVVLIDTPPIIAVTD
AAVLAQEVDGVILVLASGEVNKEYAQRAKEQLDKVGAKILGAVINKADLKTSEYYYYYYYHGSDDPKKKKKKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0061 YP_300151.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 6e-39 44
cap1B AAA64641.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 4e-39 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desmer_4172 YP_006623871.1 capsular exopolysaccharide biosynthesis protein VFG1368 Protein 1e-22 41