Gene Information

Name : Desmer_4170 (Desmer_4170)
Accession : YP_006623869.1
Strain : Desulfosporosinus meridiei DSM 13257
Genome accession: NC_018515
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4346812 - 4347510 bp
Length : 699 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGGCAAGCAAGAATATCTTAATCGTTGATGATGACCCCATTGTTTTAAGAATGCTGGAGTCTGCCCTGAGCAAAAACGG
GTATCATACGTTTAAGGCAGAGTCCGGTGAAAATGCTCTGAGGATTCTGGATGCTCTGGCCATTGATCTAGTTCTCTTAG
ATGTGGTCTTACCCGGGATGGACGGACTGAATACTCTTAAAAAGATAAGAAATCACCCCACCTATGGCTTTGTCCCGGTG
CTCATGCTGACCAGCAGGGATAGTGAAATTGATCACGTCATCGGTTTGGAATTGGGAGCTGATGATTACATTTCCAAGCC
CATCCGCTTCCATGAGCTGATTGCTCGGATCAAGGCAGTTCTGCGCAGGGCGGATTCCAATCGGACATCCTTCTCTAAGG
TAGTCTTCCGCGGTCTGGTCATGGATCTGTCCAGTCGACAAGTCACCGTCAACGATCAGGAGATAGAGCTCTCCTTCAAA
GAGTTCGAGCTCTTATGCCTTTTAGCCAAAAGACCGGGCCGAGTCTTCACCCGAGCTGAAATTCTGGATACCGTCTGGTC
GGAAGAAGGCTTCTGGGAAACTCGCACAGTGGATGTCCATATCCGCAGAATTCGCAAAAAGCTGGAGGAGATAGGCCAGA
GTCCCCTGCTCATCGAGACTGTCCGGAATGTGGGCTATCGTCTGCCAATGTCTCTTTAA

Protein sequence : 
MASKNILIVDDDPIVLRMLESALSKNGYHTFKAESGENALRILDALAIDLVLLDVVLPGMDGLNTLKKIRNHPTYGFVPV
LMLTSRDSEIDHVIGLELGADDYISKPIRFHELIARIKAVLRRADSNRTSFSKVVFRGLVMDLSSRQVTVNDQEIELSFK
EFELLCLLAKRPGRVFTRAEILDTVWSEEGFWETRTVDVHIRRIRKKLEEIGQSPLLIETVRNVGYRLPMSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-23 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desmer_4170 YP_006623869.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 1e-29 41
Desmer_4170 YP_006623869.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 1e-29 41
Desmer_4170 YP_006623869.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 1e-29 41
Desmer_4170 YP_006623869.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 1e-29 41
Desmer_4170 YP_006623869.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 1e-29 41
Desmer_4170 YP_006623869.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 1e-29 41
Desmer_4170 YP_006623869.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 1e-29 41
Desmer_4170 YP_006623869.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 1e-29 41
Desmer_4170 YP_006623869.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 1e-29 41
Desmer_4170 YP_006623869.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 1e-29 41
Desmer_4170 YP_006623869.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 1e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desmer_4170 YP_006623869.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 6e-24 44