Gene Information

Name : Desmer_3905 (Desmer_3905)
Accession : YP_006623612.1
Strain : Desulfosporosinus meridiei DSM 13257
Genome accession: NC_018515
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4068904 - 4069668 bp
Length : 765 bp
Strand : -
Note : PFAM: FliP family; TIGRFAM: type III secretion apparatus protein, YscR/HrcR family; flagellar biosynthetic protein FliP

DNA sequence : 
GTGTCTTCTTCAGGCCGGAAAATTAAGCTATTCACATTAGGTCTATCTCTTGGCCTGATAGGTCTGGGAGTGTTGTCTAA
TCCCAAAATCGCCTGGGCTGCAGGCTTATCCTTAGATTTGGGAACTTCAGCACCGGAACAAACAGGTACCTCTTTACAGA
TTCTGATGCTTCTAACCGTCCTTTCCTTAGCTCCGGCCATTCTTATGATGATGACTTCTTTTACCCGGATTATTATTGTG
TTGTCATTTGTGAGAAACGCCTTAGGAACTCAGCAATTGCCTCCGAACCAAGTACTGGTGGGTTTGTCGCTTTTTCTCTC
TTTCTTTATCATGGCCCCCACTTGGAACCAGATTAATACCAATGCTGTACAGCCCTATATGCAGAATCAGATCACTCAGA
GTGAAGCTATCGATAGGGCGGAAGAGCCTTTGAGGATGTTTATGTTTAAGCAGACACGGGAAAAGGATTTAGAACTTTTT
GTAGGTCTCTCTAAGATGGAGCGACCAAAAACCTATAGGGAAGTTCCCACTTATGTTCTCATACCTGCCTTTGTGATCAG
CGAACTGAAAACAGCTTTTCAAATGGGTTTTGCCATATTTATTCCCTTTATTGTTATCGATATGATTGTGTCCAGTACCT
TAATGTCAATCGGTATGATGATGCTTCCTCCGATGATGATTTCTCTGCCGTTTAAACTACTTCTCTTTGTCTTAGTAGAT
GGCTGGCATTTGGTGGTTGAGTCTTTAGTAAACAGCTTTAAATAG

Protein sequence : 
MSSSGRKIKLFTLGLSLGLIGLGVLSNPKIAWAAGLSLDLGTSAPEQTGTSLQILMLLTVLSLAPAILMMMTSFTRIIIV
LSFVRNALGTQQLPPNQVLVGLSLFLSFFIMAPTWNQINTNAVQPYMQNQITQSEAIDRAEEPLRMFMFKQTREKDLELF
VGLSKMERPKTYREVPTYVLIPAFVISELKTAFQMGFAIFIPFIVIDMIVSSTLMSIGMMMLPPMMISLPFKLLLFVLVD
GWHLVVESLVNSFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-21 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-20 41
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-18 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-18 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-18 41
escR AAC38369.1 EscR Virulence LEE Protein 1e-20 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-21 41
escR AAK26700.1 EscR Virulence LEE Protein 2e-21 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-21 41
escR AAL57527.1 EscR Virulence LEE Protein 2e-21 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-21 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-21 41
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-21 41
escR AAC31528.1 L0049 Virulence LEE Protein 2e-21 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 6e-21 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-21 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desmer_3905 YP_006623612.1 flagellar biosynthetic protein FliP VFG2338 Protein 1e-40 56
Desmer_3905 YP_006623612.1 flagellar biosynthetic protein FliP VFG1259 Protein 5e-46 55
Desmer_3905 YP_006623612.1 flagellar biosynthetic protein FliP VFG2016 Protein 8e-44 54
Desmer_3905 YP_006623612.1 flagellar biosynthetic protein FliP VFG2494 Protein 2e-43 53
Desmer_3905 YP_006623612.1 flagellar biosynthetic protein FliP VFG0394 Protein 7e-24 43
Desmer_3905 YP_006623612.1 flagellar biosynthetic protein FliP VFG0044 Protein 4e-24 42
Desmer_3905 YP_006623612.1 flagellar biosynthetic protein FliP VFG0188 Protein 2e-22 42
Desmer_3905 YP_006623612.1 flagellar biosynthetic protein FliP VFG0827 Protein 9e-22 41
Desmer_3905 YP_006623612.1 flagellar biosynthetic protein FliP VFG0715 Protein 8e-21 41