Gene Information

Name : Desmer_3712 (Desmer_3712)
Accession : YP_006623419.1
Strain : Desulfosporosinus meridiei DSM 13257
Genome accession: NC_018515
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3868934 - 3869623 bp
Length : 690 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
TTGGATCCGATTTTAATCGTAGATGATGAAGAAAAAATTAGAAGCTTAGTTAGGTTATATCTTGAGCGCGAAGGTTTTAC
CGTCGATGAAGCGGAGGACGGCCGGATTGCGCTGGAAAAATTTCGGGCGGGTCATTATTCACTTTTGATCGTAGACCTTA
TGATGCCTGATATAGACGGATGGCGTGTTTGTCGTGAGGTTCGAGAAAGCTCTGCACTTCCCATTATTATGTTGACAGCG
AGAGGAGAAGAATTTGACAGAGTTCTTGGTCTTGAACTTGGGGCGGATGATTATCTTGTCAAGCCTTTTAGTACTAAGGA
ATTAGTGGCCAGAGTCAAGGCTCTCTTACGACGTTCTAGGGGACAACTCCAGCCTGTGTCCTCGGAGATAACTGCAGGTT
TACTTTGCATCGACAAAGAGAGGCATCGTGTGTCCATTGGTGAGGAGGTTATTAATTTGACCCCTTTAGAATTTGACTTG
CTATATTTCTTAGCCAAGAATAAAGGTCGGGTTTTCTCCCGGGAGCAGCTTATGGAGACAGTCTGGGGATATGATTTTTA
TGGGGATGCCCGAACCGTTGATACACATGTCAAAAAACTTAGAGAGAAACTTAACCATCCAAGTGTTAAAAGGATGATAG
TGACTGTATGGGGTGTAGGATATAAATTTGATCCTGATCAGGTTCATTAA

Protein sequence :
MDPILIVDDEEKIRSLVRLYLEREGFTVDEAEDGRIALEKFRAGHYSLLIVDLMMPDIDGWRVCREVRESSALPIIMLTA
RGEEFDRVLGLELGADDYLVKPFSTKELVARVKALLRRSRGQLQPVSSEITAGLLCIDKERHRVSIGEEVINLTPLEFDL
LYFLAKNKGRVFSREQLMETVWGYDFYGDARTVDTHVKKLREKLNHPSVKRMIVTVWGVGYKFDPDQVH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-35 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-39 43
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-40 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-35 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 2e-47 49
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 3e-47 48
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 3e-47 48
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 2e-47 48
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 3e-47 48
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 2e-47 48
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 2e-47 48
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 2e-47 48
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 2e-47 48
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 2e-47 48
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 2e-47 48
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010400.5986590.p0 Protein 3e-38 45
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010410.6002989.p0 Protein 3e-39 45
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_011595.7057856.p0 Protein 3e-39 45
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 2e-36 45
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AM180355.1.gene1830. Protein 5e-41 44
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001138.1.gene4273. Protein 5e-31 44
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 3e-44 44
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 8e-46 44
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 4e-44 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE015929.1.gene1106. Protein 3e-41 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 4e-44 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 4e-44 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 4e-44 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 4e-44 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 4e-44 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 4e-44 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 4e-44 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002695.1.915041.p Protein 1e-30 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain FJ349556.1.orf0.gene Protein 2e-42 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP004022.1.gene3215. Protein 8e-34 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000034.1.gene3834. Protein 1e-30 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF155139.2.orf0.gene Protein 3e-43 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0039 Protein 3e-35 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000034.1.gene2186. Protein 3e-35 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002695.1.916589.p Protein 3e-35 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_014475.1.orf0.gen Protein 1e-36 42
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_005054.2598277.p0 Protein 1e-36 42
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000647.1.gene4257. Protein 4e-31 42
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0533 Protein 4e-31 42
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain EU250284.1.orf4.gene Protein 2e-37 42
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001138.1.gene2239. Protein 3e-35 42
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0596 Protein 3e-35 42
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000647.1.gene2531. Protein 6e-36 42
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001918.1.gene3444. Protein 1e-34 42
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF130997.1.orf0.gene Protein 4e-36 41
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE016830.1.gene1681. Protein 1e-41 41
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain DQ212986.1.gene4.p01 Protein 4e-39 41
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene1528. Protein 3e-31 41
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_008702.1.4607594. Protein 1e-31 41
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP004022.1.gene1676. Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 4e-31 45
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 7e-36 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 1e-39 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 2e-40 43
Desmer_3712 YP_006623419.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 3e-35 42