Gene Information

Name : Desmer_1401 (Desmer_1401)
Accession : YP_006621267.1
Strain : Desulfosporosinus meridiei DSM 13257
Genome accession: NC_018515
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1475264 - 1475950 bp
Length : 687 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGAAAAGTGTCCTGATCGTTGAGGATGATTTAAATATTGCAGAGATGGAGCGGGATTATCTGCAGCTAAACGGCTATAA
GGTGGATATCGTTATGGATGGGGAGGCAGGGCTACAGAAAGCTCTCACCGGGGTCTATGACATTCTGATAGTGGATTTGA
TGCTGCCGCAAAAAGATGGTTTTACGATTATCAAAGAAGTCCGGCGGAAGCTGGAGATTCCGATTATCGTTCTGTCGGCC
AGGAGTGAGGATATTGATAAAATCAGGGGACTGGATTATGGGGCCGATGATTATCTGACCAAGCCTTTCAGTCCAGCGGA
GCTTATGGCCCGCATCAAATCCCATTTAAACCGCTATGAACGCTTGACGGGCAGGAATTCAGCTTTGGAAATCATCAATT
ACCGCGGGCTGGAAATCAATACAGCCGCCCATAAAGTCTATGTCAACGGCAAAGAAGTGCAGCTCACGGCCAAGGAATAC
GAACTCTTGCTCTTTTTCGCCTCCAATCCCAACCTGGTGTTCAGTAAGGAGCACCTTTTCGATAAGCTTTGGAGTGCGGA
ATACTATGGTGATCTGGCAACTGTGGCCGTTCATATCCAAAAGATCAGGAAGAAGATTGAAAAAGATCCGGCCAATCCGG
AATATATAGAGACCCTCTGGGGAACCGGTTACCGCTTTAATTCCTGA

Protein sequence : 
MKSVLIVEDDLNIAEMERDYLQLNGYKVDIVMDGEAGLQKALTGVYDILIVDLMLPQKDGFTIIKEVRRKLEIPIIVLSA
RSEDIDKIRGLDYGADDYLTKPFSPAELMARIKSHLNRYERLTGRNSALEIINYRGLEINTAAHKVYVNGKEVQLTAKEY
ELLLFFASNPNLVFSKEHLFDKLWSAEYYGDLATVAVHIQKIRKKIEKDPANPEYIETLWGTGYRFNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-37 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 8e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desmer_1401 YP_006621267.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE015929.1.gene1106. Protein 1e-30 42
Desmer_1401 YP_006621267.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF155139.2.orf0.gene Protein 1e-46 42
Desmer_1401 YP_006621267.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AM180355.1.gene1830. Protein 1e-38 42
Desmer_1401 YP_006621267.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 6e-33 41
Desmer_1401 YP_006621267.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 6e-33 41
Desmer_1401 YP_006621267.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 6e-33 41
Desmer_1401 YP_006621267.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 6e-33 41
Desmer_1401 YP_006621267.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 6e-33 41
Desmer_1401 YP_006621267.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 6e-33 41
Desmer_1401 YP_006621267.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 6e-33 41
Desmer_1401 YP_006621267.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 6e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desmer_1401 YP_006621267.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 6e-38 42
Desmer_1401 YP_006621267.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 3e-37 41