Gene Information

Name : Desmer_1102 (Desmer_1102)
Accession : YP_006620995.1
Strain : Desulfosporosinus meridiei DSM 13257
Genome accession: NC_018515
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1138056 - 1138760 bp
Length : 705 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGCTGGAGCGTTTAAAAGTAATGTTGGTGGATGACGATGAAAGAATTCATACCATAGTAGAGCATCTTGTTCAAAAAGA
GGGGTATGACTTTTCTTATGCTGCCGACGGAGAAAAAGCTTTGCAAATGTTTGCCCTCGAAAAGCCAGATCTGATTATTC
TTGATGTCATGCTCCCCGAAATTGATGGCTTCGAAGTTTGTCGAAGAATTCGTCAAATCAGTAATGTTCCAATCATCTTG
CTTTCGGCCAAAGGGGATATTGTCGATAAGAGTGTGGGGTTCAACATGGGGGCTGATGACTATATTACTAAACCCTTTAG
TCCCATAGAACTGACTTTACGCATAAAAGCTATCTTTCGCAGAGCCTCTTTAAAAGAGAAATCCACCAGCTCCTCTAAAA
ATGAGGATAGTATTGTGATTAAGGATTTAGAAATTAACAATAAGAGTTTTGAAGTACAAGTACGAGGGGAAAAAGTTGAC
TTCACCTCCAAAGAATTTGAACTCCTATGGTTTATGGCGGAACATCCCGGCCAAGTGTTTACGCGAGAGCAGCTTTTTGA
TAATCTGTGGGGAGAAAAATATTTGGGAAGTCCCGGAACCATTACAGTTTTTGTCAGGAAAATCCGGGAGAAAATCGAGC
TTGACCCTGCCCATCCGGAGTATCTTTTGACAGTATGGGGAGTAGGCTATAAATTTTGTGATTAG

Protein sequence : 
MLERLKVMLVDDDERIHTIVEHLVQKEGYDFSYAADGEKALQMFALEKPDLIILDVMLPEIDGFEVCRRIRQISNVPIIL
LSAKGDIVDKSVGFNMGADDYITKPFSPIELTLRIKAIFRRASLKEKSTSSSKNEDSIVIKDLEINNKSFEVQVRGEKVD
FTSKEFELLWFMAEHPGQVFTREQLFDNLWGEKYLGSPGTITVFVRKIREKIELDPAHPEYLLTVWGVGYKFCD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-37 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-37 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 6e-48 48
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 4e-47 46
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_005054.2598277.p0 Protein 2e-38 42
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_014475.1.orf0.gen Protein 2e-38 42
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 2e-40 42
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 1e-40 42
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 1e-40 42
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 1e-40 42
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 1e-40 42
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 2e-40 42
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 1e-40 42
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 1e-40 42
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 1e-40 42
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 1e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 9e-38 42
Desmer_1102 YP_006620995.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 5e-38 42