Gene Information

Name : GEM_1870 (GEM_1870)
Accession : YP_006615987.1
Strain :
Genome accession: NC_018513
Putative virulence/resistance : Virulence
Product : small multidrug resistance protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2029428 - 2029766 bp
Length : 339 bp
Strand : -
Note : -

DNA sequence : 
ATGCAGCTTCCAGGCTATGCATGGCTCGCGATCGCGATCGTCGCGGAAGTGGTCGGCACGTCCGCGCTGCGCGCGGCGGA
CGGCTTCACGCGCTTCTGGCCGTCGGCGCTCGTCGTGGCCGGTTACGGCATCGCGTTCTACTGTCTGTCGCTCACGCTGC
GCACGATGCCCGTCGGCATCATCTATGCGGTGTGGTCGGGCGCCGGCATCGTACTGATCACGCTCGTCGCGATGCTGCTC
TATCGCCAGGTGCCGGACCTGCCAGCCGTGATCGGCCTCGGGCTGATCGTCTCGGGCGTCGTGGTGCTGAACCTGTTCTC
GAAGATGCAGGCGCACTGA

Protein sequence : 
MQLPGYAWLAIAIVAEVVGTSALRAADGFTRFWPSALVVAGYGIAFYCLSLTLRTMPVGIIYAVWSGAGIVLITLVAMLL
YRQVPDLPAVIGLGLIVSGVVVLNLFSKMQAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42067.1 hypothetical protein Not tested PAI II 536 Protein 2e-18 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GEM_1870 YP_006615987.1 small multidrug resistance protein BAC0324 Protein 8e-15 60
GEM_1870 YP_006615987.1 small multidrug resistance protein BAC0002 Protein 3e-16 56
GEM_1870 YP_006615987.1 small multidrug resistance protein NC_010410.6003348.p0 Protein 3e-16 56
GEM_1870 YP_006615987.1 small multidrug resistance protein CP001138.1.gene1489. Protein 1e-15 55
GEM_1870 YP_006615987.1 small multidrug resistance protein BAC0377 Protein 1e-19 53
GEM_1870 YP_006615987.1 small multidrug resistance protein CP004022.1.gene1549. Protein 3e-16 48
GEM_1870 YP_006615987.1 small multidrug resistance protein NC_002695.1.913273.p Protein 9e-12 48
GEM_1870 YP_006615987.1 small multidrug resistance protein BAC0150 Protein 9e-12 46
GEM_1870 YP_006615987.1 small multidrug resistance protein BAC0139 Protein 4e-13 46
GEM_1870 YP_006615987.1 small multidrug resistance protein BAC0327 Protein 1e-14 41
GEM_1870 YP_006615987.1 small multidrug resistance protein BAC0140 Protein 2e-11 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GEM_1870 YP_006615987.1 small multidrug resistance protein VFG1586 Protein 7e-19 46