Gene Information

Name : SFHH103_04305 (SFHH103_04305)
Accession : YP_006575326.1
Strain :
Genome accession: NC_018294
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 65769 - 66437 bp
Length : 669 bp
Strand : -
Note : -

DNA sequence :

ATGACTGAAATGCAGCCGGCAATTCTGGCCCTTCTTGCGATAACCGCGGCACTCGGCTTGCTGGTGTTAGCGGTCGTCAC
AACCACGGCGTTTGTAAAAGTATCAGTTGTTCTGTTCCTCGTCCGCAACGCACTCGGGACCCAGACGATACCACCTAACA
TAGTGCTGTACGCAGCCGCACTTATCCTCACCATGTTCGTCAGCGCACCCATTGCTGAGCAGACCTATGATCGGATAACA
GATCCGAGACTCCGTTATCAATCGCTCGACGACTGGGCTGAAGCCGCCAAAGCAGGAAGTCAGCCCTTGCTTGAACATCT
CAAGAAGTTCACAAACGAAGAGCAGCGGCGATTTTTCCTCTCCTCGACGGAAAAGGTCTGGCCTGAGGAAATGCGCGCTA
GAGTCACAGCAGATGATTTCGCCATTCTTGTTCCATCTTTTCTGATATCAGAACTAAAGCGCGCGTTCGAAATCGGCTTC
CTCCTTTATCTACCCTTTATCGTCATTGATCTTATCGTCACGACGATATTGATGGCCATGGGGATGTCGATGGTATCCCC
GACGATTATAGCTGTCCCGTTCAAACTATTCTTGTTCGTCGCTATTGATGGCTGGTCAAGATTGATGCACGGACTTGTGC
TCAGTTATACGATGCCGGGAGCTTTATGA

Protein sequence :

MTEMQPAILALLAITAALGLLVLAVVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRIT
DPRLRYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADDFAILVPSFLISELKRAFEIGF
LLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSYTMPGAL

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
lscR	AAO18040.1	LscR	Virulence	TTSS locus	Protein	2e-39	50
hrcR	BAB07862.1	HrcR	Virulence	Hrp PAI	Protein	2e-36	48
hrcR	AAP34349.1	HrcR	Virulence	Hrp PAI	Protein	1e-36	48
hrcR	AAD21321.1	HrcR	Virulence	Hrp PAI	Protein	1e-36	48
hrcR	NP_640757.1	type III secretion system protein	Virulence	Hrp PAI	Protein	1e-36	48
hrcR	YP_362153.1	type III secretion system protein	Virulence	Hrp PAI	Protein	1e-36	48
hrcR	YP_198720.1	type III secretion system protein	Virulence	Hrp PAI	Protein	1e-36	48
XC_3016	YP_244084.1	type III secretion system protein	Virulence	Hrp PAI	Protein	4e-36	47
hrcR	NP_636600.1	type III secretion system protein	Virulence	Hrp PAI	Protein	4e-36	47
hrcR	AAT96146.1	HrcR	Virulence	T-PAI	Protein	3e-32	46
hrcR	AAT96200.1	HrcR	Virulence	T-PAI	Protein	2e-32	46
YPO0270	YP_002345352.1	type III secretion system protein	Virulence	Not named	Protein	4e-32	45
hrcR	NP_791222.3	type III secretion protein HrcR	Virulence	Hrp PAI	Protein	7e-33	44
hrpW	AAB05075.1	HrpW	Virulence	Hrp PAI	Protein	5e-31	44
hrcR	AAG33884.1	HrcR	Virulence	Hrp PAI	Protein	5e-33	44
hrcR	ABQ88359.1	HrcR	Virulence	Hrp PAI	Protein	5e-31	44
escR	AAK26700.1	EscR	Virulence	LEE	Protein	4e-29	43
escR	AAL57527.1	EscR	Virulence	LEE	Protein	4e-29	43
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	4e-29	43
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	4e-29	43
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	6e-29	43
unnamed	AAL06354.1	EscR	Virulence	LEE	Protein	3e-28	43
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	6e-29	43
hrcR	AAT96262.1	HrcR	Virulence	S-PAI	Protein	4e-35	42
hrcR	AAT96303.1	HrcR	Virulence	S-PAI	Protein	4e-35	42
hrcR	AAT96343.1	HrcR	Virulence	S-PAI	Protein	4e-35	42
hrcR	ABA47279.1	HrcR	Virulence	S-PAI	Protein	3e-35	42
escR	AAC31528.1	L0049	Virulence	LEE	Protein	4e-29	42
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	4e-29	42
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	6e-29	42
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	6e-29	42
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	6e-29	42
escR	AAC38369.1	EscR	Virulence	LEE	Protein	4e-29	42
hrcR	AAB06005.2	HrcR	Virulence	Hrp PAI	Protein	1e-33	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
SFHH103_04305	YP_006575326.1	hypothetical protein	VFG0188	Protein	5e-39	52
SFHH103_04305	YP_006575326.1	hypothetical protein	VFG0394	Protein	6e-38	49
SFHH103_04305	YP_006575326.1	hypothetical protein	VFG0044	Protein	1e-38	48
SFHH103_04305	YP_006575326.1	hypothetical protein	VFG2338	Protein	3e-24	42
SFHH103_04305	YP_006575326.1	hypothetical protein	VFG0715	Protein	2e-29	42
SFHH103_04305	YP_006575326.1	hypothetical protein	VFG0827	Protein	2e-29	42
SFHH103_04305	YP_006575326.1	hypothetical protein	VFG1012	Protein	1e-30	41