Gene Information

Name : hpcC (PGA2_c00480)
Accession : YP_006561318.1
Strain : Phaeobacter gallaeciensis 2.10
Genome accession: NC_018286
Putative virulence/resistance : Virulence
Product : 5-carboxymethyl-2-hydroxymuconic semialdehyde dehydrogenase HpcC
Function : -
COG functional category : -
COG ID : -
EC number : 1.2.1.-
Position : 52064 - 53575 bp
Length : 1512 bp
Strand : +
Note : -

DNA sequence :
ATGAGCCAGCTCGACAGCAATATCGGCAAATTGGAGAGCTATCTTGCGCGGTTCCGCGACACAGGGATCCGGAATCGGAT
CGCAGGCGCGGATGTGGCCGGAGGGGCTGGCGTGTTCCAGACCATATCCCCGGTCGACAAAAGCGTGATCTGTGATGTGG
CGCATGGGACAGCGGCTGACATCGATGCTGCTGCTCAGGCTGCGCGACAGGCCTTCGCGGAATGGCGGGATCTGCCTGCG
GTCCAGCGCAAGAAAATTCTGATCCGCATTGCAGAGGGCATTGAGGCGCGTGCGGAGGAGATTGCACTCTGTGAATGCTG
GGATACCGGCCAAGCCTACAAATTCATGTCCAAGGCCGCTCTGCGCGGCGCCGAGAATTTTCGCTATTTTGCTGATCAGG
TGGTGCAGGCCCGGGACGGGCAGCACCTGCAATCCCCGACGCTGATGAATGTGACCACCCGTATGCCTATCGGCCCGGTT
GGGGTGATCACCCCCTGGAACACGCCCTTCATGCTCTCGACCTGGAAGATTGCGCCGGCGCTTGCTGCGGGATGTACCGT
CGTTCACAAACCCGCCGAAGCGTCGCCGCTGACAGCCCGCCTGCTTGTCGAAATCGCTGAGGAGGTCGGCCTGCCGCCGG
GAGTGCTGAATACGGTCAACGGGTTTGGCGATGAGGCGGGCAAGGCGCTTTGCGAACATCCGGCGATTAGGGCCATCGCC
TTTGTGGGCGAGTCGCGCACCGGCAGCCTAATTACCAAACAGGGCGCGGACACACTGAAACGCAACCATCTCGAATTGGG
CGGCAAAAACCCCGTCATCGTGTTTGAGGATGCAGATCTTGAGCGCGCTCTGGATGCAGTGATATTCATGATCTACTCAA
TCAACGGGGAACGCTGCACCTCCTCGTCGCGGTTGCTGATACAAGACAGTATAAGGGACGATTTTGAAGCCCGGCTGATC
GAGCGCATCAACAATATCAAGGTTGGTCACCCGCTGGACCCCACGACAGAAATCGGGCCGCTTGTCAGCGAAGAGCATTT
CAACAAGGTCACCAGCTATTTCGATATTGCGACGAAAGAGGGCGCAACCATTGCGGCCGGCGGCGAACCCGTAGGCGAAG
AGGGGTATTTCATAAGGCCCACCCTGTTCACGGATGCGCGCAATGACATGCGTATCGCTCAGGAGGAGATCTTTGGCCCG
GTGCTTACATCGATCCCGTTTACCACCGAAGCAGAGGCGCTGGCGCTGGCCAATGACACGGCGTACGGGCTTACCGGCTA
TCTCTGGACCAACGATCTGACACGGGCGCTGCGCTTCACCGACAGGCTGGAAACGGGCATGATCTGGGTGAACTCAGAGA
ATGTGCGCCATCTGCCAACGCCCTTCGGTGGCGTCAAAGCCTCCGGTATTGGTCGCGACGGCGGCGATTGGTCGTTTGAA
TTCTACATGGAGCAAAAGCACATTGGTTTCGCCACCGGCTCCCACAAGATTACGAAGTTAGGAGCGCTCTGA

Protein sequence :
MSQLDSNIGKLESYLARFRDTGIRNRIAGADVAGGAGVFQTISPVDKSVICDVAHGTAADIDAAAQAARQAFAEWRDLPA
VQRKKILIRIAEGIEARAEEIALCECWDTGQAYKFMSKAALRGAENFRYFADQVVQARDGQHLQSPTLMNVTTRMPIGPV
GVITPWNTPFMLSTWKIAPALAAGCTVVHKPAEASPLTARLLVEIAEEVGLPPGVLNTVNGFGDEAGKALCEHPAIRAIA
FVGESRTGSLITKQGADTLKRNHLELGGKNPVIVFEDADLERALDAVIFMIYSINGERCTSSSRLLIQDSIRDDFEARLI
ERINNIKVGHPLDPTTEIGPLVSEEHFNKVTSYFDIATKEGATIAAGGEPVGEEGYFIRPTLFTDARNDMRIAQEEIFGP
VLTSIPFTTEAEALALANDTAYGLTGYLWTNDLTRALRFTDRLETGMIWVNSENVRHLPTPFGGVKASGIGRDGGDWSFE
FYMEQKHIGFATGSHKITKLGAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpaE AAO17179.1 HpaE Not tested tcd island Protein 3e-88 48
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 4e-73 43
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 4e-73 43
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 4e-73 43
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 9e-73 43
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 4e-73 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hpcC YP_006561318.1 5-carboxymethyl-2-hydroxymuconic semialdehyde dehydrogenase HpcC VFG0082 Protein 2e-73 42