Gene Information

Name : xcpS (MRBBS_1839)
Accession : YP_006558189.1
Strain : Marinobacter sp. BSs20148
Genome accession: NC_018268
Putative virulence/resistance : Virulence
Product : general secretion pathway protein F
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1951240 - 1952451 bp
Length : 1212 bp
Strand : +
Note : -

DNA sequence :
ATGCCGGCTTTTGAATATAAGGCACTGGACGCTCGCGGAAAACAGATACAAGGCGTTCTTGAAGCCGATGCACCGCGGGC
GGTACGTCAGCAGCTGCGCGAAAAAGGGTTGACGCCACTTGCAGTAGAGCCAGCTGTGGAAAAATCGGGGCGGGGCCCAT
CATTGAATGCGCGAGGTTCACTGAACGCAGCAGATTTGGCTTTGGTTACGCGCCAGATGGCGACCTTGATCCAGTCCGGG
ATTCCCATCGAGCAGACCCTGAGTGTGACCTCAAAACAGTCGAGTAATCCGCGTATTCGCGGTATGTTAATCGCCATTCG
CGCCAAGGTGATGGAGGGTTATAGCTTCGCCGATAGCCTGGGTGAGTTCCCGCGGGCTTTTCCGCGGCTGTTCTGTTCAA
CCGTGGCCGCTGGAGAGCACGCAGGCCACCTTGACCTAGTATTGAACCGGCTCGCGGACTACACCGAAAGCCGCCAGGAA
TCCCGCCAGAAAATTCAGTTGGCGGCTATTTACCCGATTATTCTGAGCGTAGTCGCCATCTCCATTGTGGTGTTTTTGCT
CACCTATGTAGTGCCAGACATCATTGCTGTGTTTGTGCGCCAGGGACAACAGTTGCCATTGCTGACGCGGGCCATGCTGT
CCATGTCGGATTTTTTGCTGAGCTACGGTATCTATCTGCTCATTGCTCTGGGCGCTGGGCTGGTGGCGTTTCGTTTTGCG
ATGGGCAAACCAGCGTTTCGCTTGCGCATGCATAAGCGCCTGCTGCACTTACCGCTACTGGCAGGGATGGTGCGGGGCGT
TAACACGGCTCGCTATGCGAGTACCTTGAGTATACTGACCACCAGTGGTGTGCCGCTGGTGGACGCGATGCGCATTGCTG
GGGAGGTTCTCGGTAACGATTACCTGCGCCAGGAGCTAAAAGATGCTGCGCGTAAAGTCAGTGAGGGCGGAGCATTACAC
AGAGCGCTGGATCAGAGCGGTTACTTTCCACCGATGATGCTGCACATGATTGCCAGTGGCGAAGCCAGTGGCGAGCTAGA
CAGCATGTTGGAGCGCACGGCCAGAATGCAGGAAAACACTCTGCAGGCGAAAATTACTGCGATCGTTGGCCTGTTTGAGC
CATTGATGCTGTTGCTGATGGGTGGAGTGGTGCTGATTATCGTGATGGCCATTATGCTGCCGATTCTGAATATGAGTAAT
CTAGTGGGCTAA

Protein sequence :
MPAFEYKALDARGKQIQGVLEADAPRAVRQQLREKGLTPLAVEPAVEKSGRGPSLNARGSLNAADLALVTRQMATLIQSG
IPIEQTLSVTSKQSSNPRIRGMLIAIRAKVMEGYSFADSLGEFPRAFPRLFCSTVAAGEHAGHLDLVLNRLADYTESRQE
SRQKIQLAAIYPIILSVVAISIVVFLLTYVVPDIIAVFVRQGQQLPLLTRAMLSMSDFLLSYGIYLLIALGAGLVAFRFA
MGKPAFRLRMHKRLLHLPLLAGMVRGVNTARYASTLSILTTSGVPLVDAMRIAGEVLGNDYLRQELKDAARKVSEGGALH
RALDQSGYFPPMMLHMIASGEASGELDSMLERTARMQENTLQAKITAIVGLFEPLMLLLMGGVVLIIVMAIMLPILNMSN
LVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspF CAE85232.1 GspF, hypothetical type II secretion protein Not tested PAI V 536 Protein 2e-66 48
gspF YP_854405.1 type II secretion protein GspF Not tested PAI I APEC-O1 Protein 3e-66 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
xcpS YP_006558189.1 general secretion pathway protein F VFG0181 Protein 3e-96 59
xcpS YP_006558189.1 general secretion pathway protein F VFG2049 Protein 3e-63 48
xcpS YP_006558189.1 general secretion pathway protein F VFG1870 Protein 8e-66 42