Gene Information

Name : T1E_0054 (T1E_0054)
Accession : YP_006530704.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 57635 - 58138 bp
Length : 504 bp
Strand : -
Note : -

DNA sequence : 
ATGACTAAACCCTCCGACTCCGTTGCACCCAAAGAACGCATCAACATCAAGTATGTGCCCGCCACCGGTGACGAGCAGGC
CGAGGTAGAACTGCCGCACAAGATGATGGTGCTGGGCGACTTCGGCCTCGATGACAGCCGCTCCCTCGAAGACCGTCAGG
TCATGCGCATCGATAAACACACCTTCAACAACGTGTTGAACGACGCCGATGTGAGCCTGGCCATGTCGGTGCCCTCCGCG
CTTGGCGCTACTCCGGATGCAGAGCTGGCAGTCAACCTGCAATTCAAGTCCATCCAGGACTTCGGGCCAGACCGCATCGC
ACGCCAGGTGCCCGAGCTGAACAAGCTGCTGCAGCTGCGTGAAGCGCTGGTCGCCCTGAAAGGCCCGCTGGGCAACGTGC
CCACCTTCCGCAAACAGCTGCAGCACCTTCTGAACGACGCGCATGCCCGCAAGCAACTCGCGCAAGAACTGGACCTGGTG
CTTGAAGCGCCAAAAGCCGACTGA

Protein sequence : 
MTKPSDSVAPKERINIKYVPATGDEQAEVELPHKMMVLGDFGLDDSRSLEDRQVMRIDKHTFNNVLNDADVSLAMSVPSA
LGATPDAELAVNLQFKSIQDFGPDRIARQVPELNKLLQLREALVALKGPLGNVPTFRKQLQHLLNDAHARKQLAQELDLV
LEAPKAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 3e-34 50
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 6e-35 45
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 4e-35 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
T1E_0054 YP_006530704.1 hypothetical protein VFG2092 Protein 7e-42 55
T1E_0054 YP_006530704.1 hypothetical protein VFG2474 Protein 2e-34 49