Gene Information

Name : T1E_0053 (T1E_0053)
Accession : YP_006530703.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 56130 - 57617 bp
Length : 1488 bp
Strand : -
Note : -

DNA sequence :
ATGCCAAAGCCAAGCACAACTGTCACTGTTGAAACACAGGCCGAAACACTGAGCAATGCCACCTTGCTCGACCAGATCAT
GGCAGAGACCAAGTTGGTTCCCACACAAGAGGGTTACCAAGTGGCCAGGCAGGGTGTATCCGCCTTCATTGCCGAAATTC
TAAAAAGTCATGACCCAGATCAATTGATCAACAAACATCGCGTCGACCAGATGATTGCCGAGCTGGATCGGGTCCTCAGC
AAGCAGATGGATGCCATTCTGCATGAACCCGCGTTCCAGCAACTTGAATCCGCGTGGCGCAGCCTCAAACTTCTGGTCGA
CCGTACGGACTTTCGCGAGAACATCAAGCTCGAAGTCTTGCACGTCAGCAAGGAAGACTTGCTCGATGATTTCGAGAACG
CCGCCGACATTACCTGCAGTGGTATTTATAAACACGTCTATACCGCCGGTTACGGCCAGTTCGGTGGCGAGCCGGTCGCG
GCCATGGTTGGCAATTACAACTTCGGCCCCTCTTCGCCTGATATCAAACTGTTGAGCTACATGGCATCCGTCGGCGCCAT
GTCGCATGCGCCCTTCATTGCGGCACCCTCCCCCGAGTTCTTCAACCTCAGCAGCTTCGAAGCGCTACCCAATCTGAAAG
AAATCAAAGACATCTTCGCCGGCCCACGGCATGCCAAGTGGCGCGCGTTCCGCGAGAGCGAAGATGCCCGCCACATCGCG
CTGACCGGGCCGCGCTTCATGCTGCGCTCCGCCTACCATCACCAGGACCAGCCGATCAGCAGCTTCCATTACGATGAGAA
CATCAACGGCCGGCACGACAATTACCTGTGGGGCAGCTCAGCCTTCCTGTTGGCCAGCTGCATCAACGACAGCTTTGCCC
GCTACCGCTGGTGCCCCAACATCATCGGCCCGCAATCGGGAGGTGCCGTCGAAGGCCTGCCGGTGCATCTGTACGAATCG
CTGGGCCAGCTGCAGGCCAAGATTCCTACCGAGGTACTGATTTCCGACCGCAAGGAATTCGAGCTGGCCGAAGAGGGCTT
TATCGCCCTGACCATGCGCAAGGACAGCGACAACGCCGCGTTCTTCTCAGCCAACTCGGTGCAAAAGCCGAAAAACTTCC
CCAAGACACCCGAAGGCCTGCAGGCACAGACCAACTACAAGCTCGGCACCCAACTGCCCTACCTGTTCATCGTCAATCGC
CTGGCCCACTACATCAAGGTGTTGCAGCGCGAGCAGATCGGCAGCTGGAAGGAGCGACGGGACCTTGAGTCCGAACTCAA
CAAATGGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATGTGCGCAGCCGTCGGCCGTTGCGTGCTGCCA
GGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATG
GGCGCGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGA

Protein sequence :
MPKPSTTVTVETQAETLSNATLLDQIMAETKLVPTQEGYQVARQGVSAFIAEILKSHDPDQLINKHRVDQMIAELDRVLS
KQMDAILHEPAFQQLESAWRSLKLLVDRTDFRENIKLEVLHVSKEDLLDDFENAADITCSGIYKHVYTAGYGQFGGEPVA
AMVGNYNFGPSSPDIKLLSYMASVGAMSHAPFIAAPSPEFFNLSSFEALPNLKEIKDIFAGPRHAKWRAFRESEDARHIA
LTGPRFMLRSAYHHQDQPISSFHYDENINGRHDNYLWGSSAFLLASCINDSFARYRWCPNIIGPQSGGAVEGLPVHLYES
LGQLQAKIPTEVLISDRKEFELAEEGFIALTMRKDSDNAAFFSANSVQKPKNFPKTPEGLQAQTNYKLGTQLPYLFIVNR
LAHYIKVLQREQIGSWKERRDLESELNKWIKQYVADQENPSADVRSRRPLRAARVEVSDVAGDPGWYQVSLAVRPHFKYM
GANFEISLVGRLDTQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec18 YP_851426.1 hypothetical protein Not tested PAI II APEC-O1 Protein 1e-168 64
aec18 AAQ96712.1 Aec18 Not tested AGI-1 Protein 1e-168 64
HH0247 NP_859778.1 hypothetical protein Not tested HHGI1 Protein 3e-150 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
T1E_0053 YP_006530703.1 hypothetical protein VFG2093 Protein 4e-180 69
T1E_0053 YP_006530703.1 hypothetical protein VFG2475 Protein 7e-159 60
T1E_0053 YP_006530703.1 hypothetical protein VFG2070 Protein 1e-82 41