Gene Information

Name : ylcA (T1E_0475)
Accession : YP_006531125.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 540314 - 540994 bp
Length : 681 bp
Strand : +
Note : -

DNA sequence : 
ATGCCTCGCGTACTGACCATCGAAGACGACGCCGTCACCGGCCAGGAAATCGTCGCCGAACTGACCAGCCACGGTCTGGA
AGTGGATTGGGCCGACAATGGCCGCGAAGGCCTGGCCAAAGCCATTGCGGGCGGCTACGACCTGATCACCCTGGACCGCA
TGCTGCCCGAGGTCGACGGCCTGACCATCGTCACCACCCTGCGCAACCTCAAGATCGCTACGCCGATCCTGATGATCAGC
GCCCTCTCCGACGTCGATGAGCGGGTGCGCGGCCTGCGTGCCGGCGGGGACGACTACCTGACCAAGCCGTTCGCCTCCGA
CGAAATGGCTGCGCGAGTCGAGGTACTGCTGCGCCGTAACAGCGTCCCCATGACCCAGACCCGCTTGCAGGTTGCCGATC
TGCAGCTGGACCTGATCAGCCACGAAGCGCGCCGCGGTGACAACACCCTCAACCTGTTGCCCACCGAATACAAGCTGCTG
GAGTACCTGATGCGCCACAGCGGCCAGGTGATCACGCGGATGATGATTTTCGAGGAGGTCTGGGGCTATCACTTCGACCC
GGGCACCAACCTGATCGACGTGCACATTGGCCGCCTGCGCAAAAAGATCGACTCACCCGGCCAGTCGCCGCTGATCCGTA
CGGTACGGGGCTCCGGCTATGCCATTGCTGAACCCGTCTAA

Protein sequence : 
MPRVLTIEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIAGGYDLITLDRMLPEVDGLTIVTTLRNLKIATPILMIS
ALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPMTQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLL
EYLMRHSGQVITRMMIFEEVWGYHFDPGTNLIDVHIGRLRKKIDSPGQSPLIRTVRGSGYAIAEPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-33 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ylcA YP_006531125.1 two component transcriptional regulator BAC0111 Protein 2e-46 46
ylcA YP_006531125.1 two component transcriptional regulator BAC0347 Protein 8e-42 45
ylcA YP_006531125.1 two component transcriptional regulator BAC0125 Protein 1e-40 44
ylcA YP_006531125.1 two component transcriptional regulator BAC0197 Protein 3e-38 43
ylcA YP_006531125.1 two component transcriptional regulator BAC0308 Protein 5e-39 42
ylcA YP_006531125.1 two component transcriptional regulator BAC0083 Protein 7e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ylcA YP_006531125.1 two component transcriptional regulator VFG0596 Protein 5e-34 41
ylcA YP_006531125.1 two component transcriptional regulator VFG1389 Protein 3e-32 41