Gene Information

Name : T1E_0047 (T1E_0047)
Accession : YP_006530697.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 50583 - 51920 bp
Length : 1338 bp
Strand : -
Note : -

DNA sequence :
ATGAGTTCACGTAACCCCGTTCTGTGGCCCGAAGGCCTGTTCGTCAAACCGCAGCATTTCCAACAAGCTGCGCGGGCCAG
TGAAGCGGCCTTGCATCAACGCCTTGGCAGCCTCAACGCGGCCTTCTACGGCTTCAGCGAACTGCAGCTGAGCACCGAAT
ACCTGAGCCTGGGCAAGGTCGCCATCACCAAGGCGCGCGGCATCATGCCCGATGGCACAGTGTTCGATATTCCTGCCGAT
CTGCCGCCGCCGCCGCCCCTGGAAATCGAGGACGACGGTTCGAAAGACAGCGAGATATTCCTGTGCTTGCCGCTGCGGAC
CGAGGGCGGCCGTGAAGTGAGCTGGCCCGACAATGCCGCCAACTTCCGCTACAACGCTCAGGCAGAGGAGATCAAGGATA
CCCACAGCGCCGACGGTGACCTGGTGCAGGTCGACCTGGCCGTGCCCAACCTGCAGCTCAAGCGTAAAGCCGATGACAGC
AGTGCCTACACCCGCCTGGCCGTGGCTCGTATCCTGGAACGGCGCCCCGACGGTAGCCTGCAATTGGATGAAACGTTCTA
CCCCACCAGCGTTTCGGTGCGGGCAGTGCCGGCCCTTCAGCGTTTCCTTGAAGAGATCACCAACACCCTGCGCGAGCGTG
CGCGCAATCTTGCCGCCCGCATCGGCGCTTCGGGCCAGTCGGGTATCGCCGACATCCGCGACTTCAACCTGCTGCAGGCC
ATGAACCGCTGGTGGCCGTGCTTCAACCACCTGGCCAGGCAAGGACAAACACACCCCGAGCAGTTGTACCTGTCCATGAG
CCAGGCGTGTGGCGAATTCGTCACCTTCACCGACGAGAACCGGCTGCCGCAGGAATACCCGGCCTACCACCACACCGCAC
TGCGTACCTCGTTCAAGCCCCTGGAGGATACGCTCCGTCGAGCCCTGAGCACGGTCCTGCAACCCCGCGCCGTGTCACTG
CCGCTGGAGACCCTGGACTTTGGTGTGATGACGACCACGCTGGAAGACCGGCGCCTGATCAACGAAGCCGATTTCATCAT
CGCCGTGCGCGCCGACCTGCCGCCGCAAACGTTGCGCCAGATGTTCATACAGAAAGCCAAGGTCACCTCACTCGAATCCT
TGAATGACCTGGTGCCTTTGCAACTGCCGGGCATCCCGCTGCTGCCCCTGCCGGTTGCTCCACGCGACCTGCCCTTCCAT
GCGGGCTTCAGCTACTTCGAACTGGACCGCCGTGACCCCGCCTGGGCCTGCATGAAGACGGCCAACGGCTTCGGCTTCCA
CGTTGCAGGTGAGTTCCCAGGGCTTGAACTGCAGTTCTGGGCGATCAGGGGTGAATGA

Protein sequence :
MSSRNPVLWPEGLFVKPQHFQQAARASEAALHQRLGSLNAAFYGFSELQLSTEYLSLGKVAITKARGIMPDGTVFDIPAD
LPPPPPLEIEDDGSKDSEIFLCLPLRTEGGREVSWPDNAANFRYNAQAEEIKDTHSADGDLVQVDLAVPNLQLKRKADDS
SAYTRLAVARILERRPDGSLQLDETFYPTSVSVRAVPALQRFLEEITNTLRERARNLAARIGASGQSGIADIRDFNLLQA
MNRWWPCFNHLARQGQTHPEQLYLSMSQACGEFVTFTDENRLPQEYPAYHHTALRTSFKPLEDTLRRALSTVLQPRAVSL
PLETLDFGVMTTTLEDRRLINEADFIIAVRADLPPQTLRQMFIQKAKVTSLESLNDLVPLQLPGIPLLPLPVAPRDLPFH
AGFSYFELDRRDPAWACMKTANGFGFHVAGEFPGLELQFWAIRGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec25 YP_851420.1 hypothetical protein Not tested PAI II APEC-O1 Protein 5e-66 41
aec25 AAQ96719.1 Aec25 Not tested AGI-1 Protein 4e-66 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
T1E_0047 YP_006530697.1 hypothetical protein VFG2082 Protein 2e-99 49
T1E_0047 YP_006530697.1 hypothetical protein VFG2065 Protein 1e-77 45