Gene Information

Name : qseB (T1E_0457)
Accession : YP_006531107.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Virulence
Product : winged helix family two component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 518407 - 519090 bp
Length : 684 bp
Strand : -
Note : -

DNA sequence : 
ATGCACGTTCTGCTCTGCGAGGACGACGACCTGATCGCCGCCGGCATCTGCGCCGGCCTCACCGCTCAGGGCTTGACCGT
GGACCGGGTTGGCAACGCCGCCGCTGCGCGGGCGATGCTGCAGGCCGCGCAGTTCGACGTGATGATCCTCGACCTCGGCC
TGCCCGACGAAGATGGCCTCAAGCTGCTGCGCCGCCTGCGCGAAAAAGGCGAGACCCTGCCGGTACTGGTGCTCACCGCC
CGCGATGCCGTCACTGATCGTGTCGATGGCCTGCAGGCCGGTGCCGACGATTACCTGCTCAAGCCCTTCGATCTGCGCGA
GCTGGCCGCACGCCTGCATACCTTGCTGCGGCGGGTGGCCGGGCGGGCGGTGAACGTGATCGAGCACGGCCCGCTGCGCT
ATGACCCGAGTAGCTGCGAGGCGACCCTGGCCGGCCAGCATGTCGACCTGTCCCGCCGTGAGCAGGCCCTGCTCCAGGCG
CTGCTGCAGAACCCCGGGCGCGTGCTGTCCAGCGAGCAACTGAAGGACTGCGTATACGGTTTCAGCGACGAGGTCGAGAG
CAACGCCCTGAATGTGCACATCCACCACCTGCGTCGCAAGCTGGGTAACGGCATTGTCGAGACCGTGCGTGGCCTGGGCT
ACCGGCTGGGCCCGGCGCAGGCACCGCAAGAGGCCGCATCATGA

Protein sequence : 
MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMILDLGLPDEDGLKLLRRLREKGETLPVLVLTA
RDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAGRAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQA
LLQNPGRVLSSEQLKDCVYGFSDEVESNALNVHIHHLRRKLGNGIVETVRGLGYRLGPAQAPQEAAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-48 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_006531107.1 winged helix family two component BAC0487 Protein 7e-26 43
qseB YP_006531107.1 winged helix family two component CP000647.1.gene1136. Protein 9e-20 41
qseB YP_006531107.1 winged helix family two component BAC0530 Protein 1e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_006531107.1 winged helix family two component VFG1389 Protein 2e-21 44
qseB YP_006531107.1 winged helix family two component VFG0473 Protein 2e-30 43