Gene Information

Name : T1E_4242 (T1E_4242)
Accession : YP_006534865.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4618024 - 4619508 bp
Length : 1485 bp
Strand : +
Note : -

DNA sequence :
ATGAGCGCTAGCTCGAAATTCAATGTGGATCCGGCCGGGTTCCGCAATCGTAATCTTATCGGCGGGCAGTGGAAGGGCTC
GATTTCCGGCGAGACCATTACTGTCGAAAATCCCGCTACCGAGGAAATCATCGCCCATATTCCGCAGGGCCGACACGAAG
ATATCGACGAAGCGGTACGGGTCGCGCGCGCTACATTCGAGTCGCCAGCCTGGCGGAAAATTCGTCCGATCGATCGTGGT
CGGATCCTGGAGAACGTCGCACGCAAGATTGAAGAGCATGCTGACGAATTGGCGTATCTGGAGTCACTGGATACCGGCAA
GGCCTTGACGTTCGCCAAGGCCATCGACCTGCCTTCGACAATCGACGTCTTCCGCTATATGGGTGGTTGGTGTTCCAAAC
TTGGAGGGACGACCCCTCCAATTTCATTCGATGGGCGTGAATACCACACCTATACCCGACGTGAGCCGATTGGTGTAGTT
GGTGCCATTACGCCTTGGAACTACCCGCTTGCGCTGGGCTCGTGGAAGATCGCTTCGGCGCTGGCTGCCGGCTGCACCAT
GGTGCTGAAGCCCACAGAACTCACGCCTCTGAGCACTCTCCGGCTTGCAGAGCTGTGCCTTGAGGCGGGGCTGCCAGAAG
GCGCGCTCAACATCGTCAATGGTCATGGGCACGAAGCGGGCGAAGCGTTGGCGCGTCATCCGGGGGTCGACAAGATCACC
TTCACAGGCTCGACAGTAGTTGGCAAGAAGATTGTCGAGTACGCGCTGGGCAATATGAAGCGTGTCACCCTTGAGCTTGG
CGGCAAATCGCCGAGCATCGTATTTGCCGACGCGGATCTGGACCAAGTCGGTCTGGGGGCTGCACTCGCAGTCTTCTTCA
ACTCGGGACAGATCTGTTTCGCCGCCAGTCGGCTGTTCGTCCAGGACAGCGTGTATGACCAAGTGGTCGAAGCTGTGGCG
GCGGCGGCGGCACAGTTCAAGGTCGGCAATGGCTTGGATCCGGACACTCTGTTGGGGCCGTTGGTGTCTCGCAAACAGCA
AGAGCGGGTGATGGGCTATGTGCAGTCTGGGATAGAGCAGGGCGCAAGGCTGGTCTGTGGCGGGAAGTCAGTCGGAGAGA
AAGGCTATTTCCTCCAGCCCACTGTTTTTGCCGACGCAGCCCCATCAATGCGGATCGCTCAAGAAGAGATTTTCGGGCCT
GTAGTCAGTGTCATCCGATTTAAAGATGAAGCCGAGGCGATCCGGATGGCCAACGACACAGCTTATGGCTTGGCCGCCAA
TATTTGGACGCGGGACATCAAGAAGGCCCACCGGGTCGCGCACCGCTTGCAGGCGGGTTCGGTGTGGATCAACTGTCACG
GTGTGATCGATCCAGCTGCACCATTTGGAGGATTCAAGCAGTCAGGCTGGGGGCGCGAGGTCTCGGAGGAAGGGCTGTCT
GCCTATACAGAGACTAAGACGGTCTGCGCACTACTCGATGACTGA

Protein sequence :
MSASSKFNVDPAGFRNRNLIGGQWKGSISGETITVENPATEEIIAHIPQGRHEDIDEAVRVARATFESPAWRKIRPIDRG
RILENVARKIEEHADELAYLESLDTGKALTFAKAIDLPSTIDVFRYMGGWCSKLGGTTPPISFDGREYHTYTRREPIGVV
GAITPWNYPLALGSWKIASALAAGCTMVLKPTELTPLSTLRLAELCLEAGLPEGALNIVNGHGHEAGEALARHPGVDKIT
FTGSTVVGKKIVEYALGNMKRVTLELGGKSPSIVFADADLDQVGLGAALAVFFNSGQICFAASRLFVQDSVYDQVVEAVA
AAAAQFKVGNGLDPDTLLGPLVSRKQQERVMGYVQSGIEQGARLVCGGKSVGEKGYFLQPTVFADAAPSMRIAQEEIFGP
VVSVIRFKDEAEAIRMANDTAYGLAANIWTRDIKKAHRVAHRLQAGSVWINCHGVIDPAAPFGGFKQSGWGREVSEEGLS
AYTETKTVCALLDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 7e-82 44
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-83 43
hpaE AAO17179.1 HpaE Not tested tcd island Protein 4e-83 43
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 2e-86 43
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 2e-86 43
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 2e-86 43
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 3e-86 43
unnamed AAK01506.1 putative aldehyde dehydrogenase Not tested PAGI-1 Protein 9e-79 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
T1E_4242 YP_006534865.1 aldehyde dehydrogenase VFG0082 Protein 9e-84 43