Gene Information

Name : T1E_4226 (T1E_4226)
Accession : YP_006534849.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Unknown
Product : DNA topoisomerase III
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4603247 - 4605211 bp
Length : 1965 bp
Strand : -
Note : -

DNA sequence :
ATGCGCCTGTTCATCTGCGAGAAACCATCCCAAGCCCGCGATATCGCCCGGGTGCTGCAGGCCAGCCACCGCGCTGATGG
CTGTCTGAAGGGGCAGAACGTCACCATCACCTGGTGCGTCGGCCATCTGCTGGAGACCGCTCCGCCTGAAACCTATGGCG
ACTACAAGCGCTGGTCGCTGGACGATCTGCCGATCATTCCCAGTCAATGGAAATTGGTGGCCAAGCCCAAGGTCGCTGGC
CAGCTCAAGGTGATCAGTCAACTGCTGCGCACCTGCAGCGAGGTGGTCATCGCTACCGATGCCGACCGCGAAGGCGAGAT
GATCGCCAGGGAGATTCTCGAGCGCTGCCAGTATCAGGGGCCTATTTTGCGCCTGTGGCTCTCCGCGCTGGACGAGGCGT
CGATCCGCCGAGCCCTGGGCGCCTTGCGTCCAGGGGAGGAAACCTTGCCGCTGTATCACTGTGCGCTGGCCCGCTCCCGT
GCCGACTGGCTGGTCGGCATCAACCTGAGCCGGCTGTTCACGCTGCTCGGCCGCCGCTCCGGTTTCGATGGACTGCTGCC
GGTGGGACGCGTACAGACGCCCACCCTGCGCTTGGTGGTCGAGCGCGACCGGGCGATCGCCAGCTTTGTGCCGCTACCGT
TCTGGACCGTCGATGTGCACCTGGAGCAGGACGGGATCCGCTTTCAAGCGCGCTGGCAGGCCCCGACCGCGGTCAGCGAT
GCGGTTGGACGCTGTATTGACGAAACCGCCGCACAGCAGGCGCAGAGACGCTTCATTCAAGCCGGCACCGCCGAGATCGA
TAATGCCGAAGTCGAGCACGTGCGCGAAGGCCCGCCGCTACCGTTCGACCTGGGCACGTTGCAGGAAATCTGCTCGGCCA
AGCTCGGATTGGGTGCACAGGAAACCTTGGCCACCGCCCAGGCCCTGTATGAAACCCACAAGGCGACGACGTACCCGCGG
ACCGATTGCGGCTATTTGCCGGAGAGTATGCTCGATGAGGTGCCTCGCGTGCTTCACGCCCTGGCCGCTGCACCATCGCT
GGGGGCAGTGCTCAAGGAAGTCGACCCCAGCCGCCGCTCCCGTGCCTGGAACAGCAGCAAGATCACCGCGCACCACGGCA
TCATCCCCACCGCCGTCACGCTGGATCTGGCGCAGCTCTCCGAACGCGAGCGGGCGGTTTACACGCTGATCCGCGCACGC
TACCTCGCGCAGTTCATGCCCGAGCACGAATACCTCAAAACCCAGGCGCTGCTGCACAGCCAGGCAGATCAACTGGTGGC
GCGCGGCAAACAGATCCTGGTCCGCGGCTGGAAGGCAGTGATCAACGAGGCCGACGGTAACGAGCCGGCCGAACAGGCGC
AGCGACTACCCACGTTGCGTGAATCCGCGACGGTGGCGCTGATCGACGCCACGCTCAATGCACAGCGCACACAACCGCCC
AAGGCCTACACCGAAGGCACGCTGGTCAAAGCCATGAAAACCATCGCCAACCAGGTGGCCGATCCGCGGCTGAAGCAGAA
GCTCAAGGACAGTTGCGGGCTCGGTACCGAGGCCACCCGCGCGGCCATCATCCAGGGCCTGATCGATCACGGTTACCTGA
CCAAGAAGAAACGCAGCCTGGCTGCCTCAGCGGCGGCGCATACCTTGATCGAAGCGGTGCCACCAGAGGTGGCCGACCCG
GTCATGACTGCGCTGTGGGAGCAGGCGCTGGATCGCATCGAATCGGGCCAGCTGAGTGTCGATACCTTTCTCGCCAAGCA
GGCAGAGTGGCTGACCCGCTTGGTGCGCAGTAACGCCACGCTCACCCTGCGCCCGCCCCCCAGCAAGGGGCCCTTCTGCC
CGGTGTGCCGCAGCACCATGCGCCAGCGTAAAGGTCGCACCGGCAGCTTCTGGTCGTGCATCCGCTACCCCGAGTGCAAG
GGCACCAAACCGGTGGCGAAAGCCAAGCGGGCGAAAAACGCATGA

Protein sequence :
MRLFICEKPSQARDIARVLQASHRADGCLKGQNVTITWCVGHLLETAPPETYGDYKRWSLDDLPIIPSQWKLVAKPKVAG
QLKVISQLLRTCSEVVIATDADREGEMIAREILERCQYQGPILRLWLSALDEASIRRALGALRPGEETLPLYHCALARSR
ADWLVGINLSRLFTLLGRRSGFDGLLPVGRVQTPTLRLVVERDRAIASFVPLPFWTVDVHLEQDGIRFQARWQAPTAVSD
AVGRCIDETAAQQAQRRFIQAGTAEIDNAEVEHVREGPPLPFDLGTLQEICSAKLGLGAQETLATAQALYETHKATTYPR
TDCGYLPESMLDEVPRVLHALAAAPSLGAVLKEVDPSRRSRAWNSSKITAHHGIIPTAVTLDLAQLSERERAVYTLIRAR
YLAQFMPEHEYLKTQALLHSQADQLVARGKQILVRGWKAVINEADGNEPAEQAQRLPTLRESATVALIDATLNAQRTQPP
KAYTEGTLVKAMKTIANQVADPRLKQKLKDSCGLGTEATRAAIIQGLIDHGYLTKKKRSLAASAAAHTLIEAVPPEVADP
VMTALWEQALDRIESGQLSVDTFLAKQAEWLTRLVRSNATLTLRPPPSKGPFCPVCRSTMRQRKGRTGSFWSCIRYPECK
GTKPVAKAKRAKNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
topB AAN62317.1 putative DNA topoisomerase III Not tested PAGI-3(SG) Protein 0.0 58
pph56 CAI36097.1 Topoisomerase IA Not tested PPHGI-1 Protein 0.0 58
topB AAN62194.1 putative DNA topoisomerase III Not tested PAGI-2(C) Protein 0.0 57
PMI2630 YP_002152332.1 DNA topoisomerase III Not tested Not named Protein 6e-156 48
topB NP_458624.1 topoisomerase B Not tested SPI-7 Protein 1e-153 47
topB NP_807836.1 DNA topoisomerase III Not tested SPI-7 Protein 1e-153 47
topB AAF14809.1 topoisomerase B Not tested SPI-7 Protein 8e-154 47
topB1 YP_005176228.1 DNA topoisomerase III Not tested ICEPmu1 Protein 2e-144 47