Gene Information

Name : T1E_0412 (T1E_0412)
Accession : YP_006531062.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 468611 - 470101 bp
Length : 1491 bp
Strand : +
Note : -

DNA sequence :
ATGCCCAAGCCAAGCAGCACCGCCATCACCACAGACGCAACGGCCGACACATTGAGCAATGCCACCCTGCTCGACCAGAT
CATGGCAGAAACCAAACTGGTACCTGCCCAGGAGGGCTACCAGATTGCCAGGCAGGGCGTATCTGCCTTCATCACCGAAA
TACTCAAAAGCAATGACCCAGATCAACTGATCAACAAGCACCGAGCCGACCAGATGATTGCCGAGATCGACCGAATGCTC
GGCAATCAGATGGATGCCATTCTGCATCAGCCTGAGTTCCAGCAGCTTGAATCATCATGGCGCAGCCTTAAACTTCTGGT
CGACCGCACGGACTTCAGGGAGAACATCAAGCTTGAAGTCTTGCATGTCACGAAAGAGGACCTGCTCGACGACTTCGAAA
ATGCTGCTGACATTACCTGCAGCGGTATCTACAAGCATGTTTACACCGCGGGTTATGGCCAATTCGGGGGAGAGCCGGTT
GCGGCCATGGTAGGCAACTACAACTTCGGCCCCTCTTCCCCTGACATCAAGTTGCTAAGTTACATGGCCTCCGTTGGCGC
CATGTCCCATGCCCCTTTTCTTGCTGCACCTGCCCCCGAATTTTTCAATTTGAACAGCTTCGAGGAGCTGCCTAACCTCA
AGGAAATAAAAGACCTCTTCGCCGGCCCTCGGCATGCCAAGTGGCGCGCTTTTCGTGAAAGCGAAGACGCCCGCCACGTC
GCCCTGACCGGGCCGCGCTTCATGCTTCGCTCCGCTTACCACCCGCAGGAACAACCGATCGAGAGCTTCAACTACAACGA
AGGCATCGCCGGGCAGCACGACAACTACCTGTGGGGCAATTCTGCTTTTCTGTTAGCCAGTTGCATCAACGACAGCTTCG
CCCGCTACCGCTGGTGCCCGAATATCATCGGCCCCCAATCCGGCGGTGCTGTCGAAGACTTGCCGGTCCACCTGTACGAA
TCCCTGGGCCAGTTGCAGGCCAAGATTCCTACCGAGGTGCTGATATCCGACCGCAAGGAATTCGAACTGGCCGAAGAGGG
CTTCATCGCCCTGACCATGCGCAAAGACAGCGACAACGCCGCGTTCTTCTCCGCCAACTCGGTACAAAAGCCCAAGCACT
TCCCAAAAACCCCTGAGGGGCTTCAGGCACAGACCAACTACAAGCTGGGTACCCAGTTGCCCTACCTGTTCATCGTCAAC
CGGCTCGCCCACTACATCAAGGTGCTGCAGCGCGAGCAGATCGGCAGTTGGAAAGAGCGCCGTGACCTTGAGTCCGAGCT
GAACAAATGGATCAAGCAGTACGTCGCCGACCAGGAGAACCCGTCTGCCGACGTTCGCAGCCGCCGGCCGCTGCGTGCCG
CCCGTATTGAGGTCTCGGATGTTGCGGGTGACCCGGGCTGGTACCAGGTTTCGCTCGCCGTACGTCCGCACTTCAAGTAC
ATGGGCGCGAACTTCGAGATTTCCCTGGTCGGGCGGCTCGATACGCAATGA

Protein sequence :
MPKPSSTAITTDATADTLSNATLLDQIMAETKLVPAQEGYQIARQGVSAFITEILKSNDPDQLINKHRADQMIAEIDRML
GNQMDAILHQPEFQQLESSWRSLKLLVDRTDFRENIKLEVLHVTKEDLLDDFENAADITCSGIYKHVYTAGYGQFGGEPV
AAMVGNYNFGPSSPDIKLLSYMASVGAMSHAPFLAAPAPEFFNLNSFEELPNLKEIKDLFAGPRHAKWRAFRESEDARHV
ALTGPRFMLRSAYHPQEQPIESFNYNEGIAGQHDNYLWGNSAFLLASCINDSFARYRWCPNIIGPQSGGAVEDLPVHLYE
SLGQLQAKIPTEVLISDRKEFELAEEGFIALTMRKDSDNAAFFSANSVQKPKHFPKTPEGLQAQTNYKLGTQLPYLFIVN
RLAHYIKVLQREQIGSWKERRDLESELNKWIKQYVADQENPSADVRSRRPLRAARIEVSDVAGDPGWYQVSLAVRPHFKY
MGANFEISLVGRLDTQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec18 YP_851426.1 hypothetical protein Not tested PAI II APEC-O1 Protein 1e-162 66
aec18 AAQ96712.1 Aec18 Not tested AGI-1 Protein 8e-163 66
HH0247 NP_859778.1 hypothetical protein Not tested HHGI1 Protein 7e-146 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
T1E_0412 YP_006531062.1 hypothetical protein VFG2093 Protein 7e-174 69
T1E_0412 YP_006531062.1 hypothetical protein VFG2475 Protein 3e-152 61
T1E_0412 YP_006531062.1 hypothetical protein VFG2070 Protein 5e-78 41