Gene Information

Name : T1E_4150 (T1E_4150)
Accession : YP_006534773.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4528335 - 4529162 bp
Length : 828 bp
Strand : -
Note : -

DNA sequence :
ATGCAACTCGCATCCCGATTCGCTTCCCGTTCCCCGTCGCTGCGCAGCGATTACCCGCTGTCCGATGACCAAATCCGCCG
TGTGGCCCCGTCCATCTTCGCGGACGCCCCGCACGAAAGCCGTTCCGAGCGGTACGCCTATATCCCGACCGCCGCTGTGC
TGGCGGAACTGCGCAAAGAAGGGTTCCAGCCCTTCATGGTGGCGCAGACCCGAGTGCGCAACGAAGACCGCCGCGACTTC
ACCAAGCACATGATCCGGCTGCGCCATGCCAACCAGATCAATGATGCAGAAGCCAATGAAATCGTCCTGCTGAACTCGCA
CGACGGCACCAGCAGCTATCAATTATTGGCTGGCCTGCTGCGCTTTGTCTGCCAGAACGGATTGGTATTCGGCGACACCG
TGGCCGATGTGCGCGTACCCCACAAGGGCGACGTGGCCGGGCACGTCATCGAAGGCGCTTACGAAGTGTTGAGCGGCTTC
GACCGGGTGAAGGAATCCCGCGATTCCATGCGCGCCATCACCTTGAACGATGGCGAATCCGAAGTGTTCGCCCGCGCCGC
GCTGGCCCTCAAGTACGACGACCCCGACAAGCCCGCACCCATCACCGAATCGCAAATCCTGATGCCGCGCCGCTTCGACG
ACCGCCGCCCGGACTTGTGGAGCGTGTTCAACCGCACGCAAGAGAACCTGACTCAAGGAGGCCTGCGCGGGCGCAGCGCC
AACGGACGCCGCCAGCAAACCCGCCCGGTGCAGGGCATCGACCAAAACATCCGCCTCAACCGTGCGCTTTGGCTGCTGGC
CGATGGCATGCGCCAGTTGAAAGCCTGA

Protein sequence :
MQLASRFASRSPSLRSDYPLSDDQIRRVAPSIFADAPHESRSERYAYIPTAAVLAELRKEGFQPFMVAQTRVRNEDRRDF
TKHMIRLRHANQINDAEANEIVLLNSHDGTSSYQLLAGLLRFVCQNGLVFGDTVADVRVPHKGDVAGHVIEGAYEVLSGF
DRVKESRDSMRAITLNDGESEVFARAALALKYDDPDKPAPITESQILMPRRFDDRRPDLWSVFNRTQENLTQGGLRGRSA
NGRRQQTRPVQGIDQNIRLNRALWLLADGMRQLKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG86 AAN62307.1 conserved hypothetical protein Not tested PAGI-3(SG) Protein 3e-107 79
ORF C80 AAN62174.1 conserved hypothetical protein; associated with oriT region on plasmids Not tested PAGI-2(C) Protein 1e-105 76
unnamed CAD66201.1 hypothetical protein Not tested PAI III 536 Protein 1e-66 52
z1215 CAD33785.1 Z1215 protein Not tested PAI I 536 Protein 1e-67 52
ECO103_3587 YP_003223444.1 hypothetical protein Not tested LEE Protein 3e-68 52
c5156 NP_757004.1 hypothetical protein Not tested PAI II CFT073 Protein 6e-67 51
ORF_47 AAZ04456.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 4e-67 51
yafZ YP_854321.1 hypothetical protein Not tested PAI I APEC-O1 Protein 5e-67 51
unnamed CAI43843.1 hypothetical protein Not tested LEE Protein 2e-67 51
S3199 NP_838482.1 hypothetical protein Not tested SHI-1 Protein 1e-67 51
aec71 AAW51754.1 Aec71 Not tested AGI-3 Protein 2e-67 51
SF2994 NP_708768.1 hypothetical protein Not tested SHI-1 Protein 1e-67 51
yafZ ADD91704.1 YafZ Not tested PAI-I AL862 Protein 2e-67 51
Z1215 NP_286750.1 hypothetical protein Not tested TAI Protein 1e-67 51
Z1655 NP_287158.1 hypothetical protein Not tested TAI Protein 1e-67 51
yafZ CAE85199.1 YafZ protein Not tested PAI V 536 Protein 3e-69 51
unnamed CAD42096.1 hypothetical protein Not tested PAI II 536 Protein 3e-66 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
T1E_4150 YP_006534773.1 hypothetical protein VFG1526 Protein 7e-68 52
T1E_4150 YP_006534773.1 hypothetical protein VFG1676 Protein 8e-67 52
T1E_4150 YP_006534773.1 hypothetical protein VFG0658 Protein 6e-68 51
T1E_4150 YP_006534773.1 hypothetical protein VFG1615 Protein 2e-66 51