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Name : cap1D (T1E_3064) Accession : YP_006533695.1 Strain : Pseudomonas putida DOT-T1E Genome accession: NC_018220 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : - COG ID : - EC number : - Position : 3366022 - 3368031 bp Length : 2010 bp Strand : + Note : - DNA sequence : ATGAGCGACGCAAAGAACAGCAGGGTGCGTGAGTACCTAGTTAACCTGTCCAGGCGGAAAAAGCGTCTTGTGCAAGTGTG CGCCGACGTGGTGCTGATCTGGTTGGCGTTATGGTTGTCTTTTATCGTGCGCCTGGGCATCGATGAAATGTACAACCCGG TCATCAAACACGCCTGGTTGTTCATGGTTGCGCCTCTCGTAGCCATTCCGCTGTTCATTCGTTTTGGCATGTACCGGGCG GTGATGCGCTACTTCGGCAATGATGCATTGGTGACCATTATCAAGGCCGTTACCCTGTCATCGCTCATTCTGGCTGTGGT TGTGTACTGGTACAGCAACCATCAGGTAATCGTGCCGCGCTCGATCATTTTCAACTATTGGTGGTTGAGCATGGTCATCA TTGGTGGTTTACGCCTGATCATGCGCCAGTATTTCCTGGGTGACTGGTTTACCGGCGCCCATCAGATACCGTTCGCCAAC CGCGATGATGGCCTGGTCAAGGTAGCCATCTATGGTGCAGGCACCGCCGGCAACCAGCTGCTGGCAGCGTTGCGCATGGG GCGGGCGATGCGCCCGGTGGCGTTCATTGATGATGACAGTGACCTTGCCAACCGGGTCATTTCCGGTTTGCAGGTGTACA AGCCCAAGCATCTGCAGCAGATGATCAAGGAAACCGGTGCACAGGAAATCCTCCTCGCCCTGCCTTCGGTATCGCGCGCC CGGCGCAAGGAGATTCTCGCCTTGCTCGAACCTTACCCGTTGCACGTGCGCAGCGTGCCGGCCTTTGCCGACCTGGCAAG TGGCCGGGTCAAAGTGGATGACATCCAAGACGTGGACATTGCCGATTTGCTTGGGCGTGACCCGGTCCCCGCCAAGGAAG GGCTGCTCGAACGCTGCATCCACAAGCAAACGGTACTGGTCACCGGGGCCGGTGGCTCCATCGGCTCCGAGCTTTGCCGC CAGATCATAGGGCTTGGGCCAACGACATTGCTGCTGTTCGACCACAGCGAGTACAACCTCTACGCTATCCTCAGTGAGCT GGAGCAACGCGTTGCGCGCGAGTCGCTGCCGGTTCGACTGCTGCCCATTCTGGGGTCGGTACGCAATCAGCAGCATCTTG CCCACGTTATGTCCACTTGGCGGGTAGCCACCGTCTACCACGCGGCGGCTTACAAACATGTGCCCATGGTTGAGCACAAC ATGGCGGAGGGCATACTCAACAATGTGTTCGGCACGCTTTGTACCGCACAGGCTGCTTTGCAATCAGGCGTTGCCAACTT CGTGCTTATCTCGACTGACAAGGCGGTGCGCCCCACGAACGTGATGGGCGGTACCAAGCGTCTTTCCGAGTTGATTCTGC AAGCACTAAGCCGCGAGGCGGCACCCGTCATGTACGGTGACAGCAGCAAGATCGCCCGGGTGAACAAAACCCGCTTCACC ATGGTGCGCTTTGGCAATGTGCTGGGCTCCTCTGGCTCGGTGATCCCGTTGTTCCACAAGCAGATCAAGGCCGGTGGCCC AATTACAGTTACCCACCCGAAGATTACCCGCTATTTCATGACTATCCCCGAAGCCGCTCAACTGGTGGTTCAGGCAGGGG CGATGGGGCAGGGCGGGGACGTATTTGTTCTCGACATGGGGGAGCCGGTAAAAATTGTTGAGCTGGCTGAGAAAATGATT CATCTCTCGGGCCTTAGCGTACGTAGCTCGGGTAACCCCAATGGTGATATCGCCATCGAGTTCACGGGGTTGCGCCCAGG TGAGAAGCTTTTTGAAGAGTTGTTGATTGGCGATGACGTTTCGCCTACCGTCCACCCGATGATCATGGTAGCGAATGAAG ACTACGTCACTTGGGACGTCTTGCGTGAACGTATTGCCGTGTTACTCAATGCAGTGGCGGTGGATGACTTTGGCCGTATC CGGCAACTGTTGCGTGAACTAGTGAACGGGTATGTGCCGGAAGGAGAAATTGTCGACTGGATCTACCAACAGCAGCGGCA GGACAGTTGA Protein sequence : MSDAKNSRVREYLVNLSRRKKRLVQVCADVVLIWLALWLSFIVRLGIDEMYNPVIKHAWLFMVAPLVAIPLFIRFGMYRA VMRYFGNDALVTIIKAVTLSSLILAVVVYWYSNHQVIVPRSIIFNYWWLSMVIIGGLRLIMRQYFLGDWFTGAHQIPFAN RDDGLVKVAIYGAGTAGNQLLAALRMGRAMRPVAFIDDDSDLANRVISGLQVYKPKHLQQMIKETGAQEILLALPSVSRA RRKEILALLEPYPLHVRSVPAFADLASGRVKVDDIQDVDIADLLGRDPVPAKEGLLERCIHKQTVLVTGAGGSIGSELCR QIIGLGPTTLLLFDHSEYNLYAILSELEQRVARESLPVRLLPILGSVRNQQHLAHVMSTWRVATVYHAAAYKHVPMVEHN MAEGILNNVFGTLCTAQAALQSGVANFVLISTDKAVRPTNVMGGTKRLSELILQALSREAAPVMYGDSSKIARVNKTRFT MVRFGNVLGSSGSVIPLFHKQIKAGGPITVTHPKITRYFMTIPEAAQLVVQAGAMGQGGDVFVLDMGEPVKIVELAEKMI HLSGLSVRSSGNPNGDIAIEFTGLRPGEKLFEELLIGDDVSPTVHPMIMVANEDYVTWDVLRERIAVLLNAVAVDDFGRI RQLLRELVNGYVPEGEIVDWIYQQQRQDS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 9e-82 | 42 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 4e-81 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| cap1D | YP_006533695.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 2e-123 | 46 |
| cap1D | YP_006533695.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 9e-80 | 42 |
