Gene Information

Name : dnaB (T1E_2614)
Accession : YP_006533249.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2860838 - 2862241 bp
Length : 1404 bp
Strand : +
Note : -

DNA sequence :
GTGGCCATGAACGAGATCACCACCTCCGAACAGCTTGACCTGCAAACCGCAGCCCTGAAGGTACCGCCGCATTCCATCGA
GGCCGAACAGGCCGTGCTCGGTGGCCTGATGCTGGACAACAATGCCTGGGAGCGGGTGCTGGACCAGGTGTCGGACGGCG
ATTTCTACCGGCATGACCACCGGCTGATCTTCCGCGCTGTGCACAAGTTGGCCGACGCCAACCAGCCATTCGATGTGGTG
ACCCTGCACGAGCAGTTGGACAAGGAAGGCCTGTCCTCGCAGATCGGCGGTTTGGCTTACCTGGCCGAGCTGGCCAAGAA
CACCCCTTCGGTGGCCAACATCAAGGCCTACGCCGCGATCATTCGCGAGCGGGCCACGTTGCGCCAGCTGATCAGCATCA
GTACCGACATCGCCGACAACGCGTTCAACCCGCAGGGGCGCAACGCTGCCGAGATTCTCGACGATGCCGAACGGCAGATC
TTCCAGATCGCCGAGGCACGGCCTAAAACCGGCGGCCCGGTGGGCGTCAACGAGCTGTTGACCATGGCCATCGACCGCAT
CGATACGCTGTTCAACTCCGACAGCGACATCACCGGTATTTCCACCGGGTACACCGATCTCGACGAAAAGACCAGCGGCC
TGCAGGCGGCGGACTTGATCATCGTCGCCGGCCGTCCGTCGATGGGTAAGACCACCTTCGCCATGAACCTGGTGGAAAAC
GCCGTACTGCGGACCGACAAGGCGGTGCTGGTGTTCTCCCTCGAGATGCCTGGGGAGTCGCTGATCATGCGTATGCTTTC
GTCTCTGGGTCGTATCGACCAGACCAAGGTCCGTTCCGGTCAGCTGGATGACGACGACTGGCCGCGCCTGACCTCGGCAG
TGAACCTGCTCAACGACCGAAAATTGTTCATCGACGATACGGCGGGTATCAGCCCCTCGGAAATGCGCGCGCGTACCCGC
CGCCTGGCCCGTGAGCATGGTGAAATCGCCATGATCATGGTCGACTACCTGCAGCTGATGCAGATTCCGGGGTCGGCCGG
TGACAACCGTACCAACGAAATTTCCGAGATTTCCCGCTCGCTCAAGGCCCTGGCCAAGGAATTCAACTGCCCGGTCATTG
CCCTTTCGCAGCTGAACCGCTCGCTGGAACAGCGCCCGAACAAACGCCCGGTGAACTCCGACTTGCGTGAATCCGGTGCA
ATCGAGCAGGACGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTGTACCACCCCGAGACCGAGCACAAGGGCGTGGC
GGAAATCATCATCGGCAAACAGCGTAACGGCCCCATCGGCTTCGTGCGTTTGGCGTTTATCGGCAAGTACACCCGGTTCG
AGAACTTGGCGCCGGGGATGTACAACTTTGATGATGATGAATAA

Protein sequence :
MAMNEITTSEQLDLQTAALKVPPHSIEAEQAVLGGLMLDNNAWERVLDQVSDGDFYRHDHRLIFRAVHKLADANQPFDVV
TLHEQLDKEGLSSQIGGLAYLAELAKNTPSVANIKAYAAIIRERATLRQLISISTDIADNAFNPQGRNAAEILDDAERQI
FQIAEARPKTGGPVGVNELLTMAIDRIDTLFNSDSDITGISTGYTDLDEKTSGLQAADLIIVAGRPSMGKTTFAMNLVEN
AVLRTDKAVLVFSLEMPGESLIMRMLSSLGRIDQTKVRSGQLDDDDWPRLTSAVNLLNDRKLFIDDTAGISPSEMRARTR
RLAREHGEIAMIMVDYLQLMQIPGSAGDNRTNEISEISRSLKALAKEFNCPVIALSQLNRSLEQRPNKRPVNSDLRESGA
IEQDADVIMFVYRDEVYHPETEHKGVAEIIIGKQRNGPIGFVRLAFIGKYTRFENLAPGMYNFDDDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 8e-119 58
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 2e-106 56
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 7e-104 52
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 3e-104 52
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 8e-104 51
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 3e-98 48
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 2e-96 46
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 2e-96 46
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 2e-78 42