Gene Information

Name : T1E_2458 (T1E_2458)
Accession : YP_006533097.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2700191 - 2701693 bp
Length : 1503 bp
Strand : -
Note : -

DNA sequence :
ATGACCGACAAGCAAACCGCACCGCAACAGGCCGGCGACCTGGTCGAAGTGGAAAACTTCGCACCACAGCCCTCGCTGCT
CGACAGCATCATTTCGCAAAGCCGCGTGGCCCGCTCCGACACCGAGCGCAACCGCACCCGCGACCTGATTGGCGAACTGG
TGAACCAGGTGCTCGAGGGTGAGATGACCCCGAGCAAGGACCTGATCGCCGTGCTCGATTCGCGCATCGCCGAAATCGAC
GCGATGCTCTCCGAGCAGATGAACGAGATCATGCACGCCCGCGAGTTCCAGCAGTTGGAAGCCTCCTGGCGCGGCCTGAA
ATACCAGGTAGACCAGACCGAGACCAGCACCACGCTGAAGATCCACCTGCTCAATGCCTCGAAGAAAGACCTGGTGCGCG
ACCTGAAGGCCGCCAGCGAATTCGACCAGAGCGCACTGTTCAAGAAGGTCTACGAAGAAGAGTACGGCACCTTCGGTGGC
GCACCTTTCGGCATGTTGATCGGTGACTACGAGTTCAACCGCAACCCCGAAGACATGTACCTGCTCGAAGAGATCTCGCA
CGTCGCGGCGGCGGCGCACGCGCCGTTCATCTCGGCCGCTTCGTCCGAGCTGTTCGGCTGGGACTCGTTCACCGAGATGT
CCGGCCCGCGTGACCTGGCGAAGATCTTCGACACCGTGGAATACGCCAAGTGGAAGTCGTTCCGCGCCTCGGAAGACTCG
CGCTACGTCGGCCTCACCCTGCCCCACGTGCTCGGTCGTCTGCCGTATGGCCCGGATACCACCCCGGTGGAAGAATTCAA
CTTCGTCGAAAGCGTCGATGGCCGCGACCACAACAAATACCTGTGGATGAACGCCGCCTACGCCCTCGGCACCCGCGTCA
CCGACGCCTTCGCCCGCTACGGCTGGTGCGTGGCCATCCGCGGCGTGGAAGGCGGCGGCCTGGTCGAAGGCCTGCCGACC
CATACCTTCAAGACCGACGACGGCGAAATCGCCCTCAAGTGCCCGACCGAAATCGCCATCACCGACCGCCGCGAAAAAGA
GCTGTCGGACCTGGGCTTCATCCCCCTGGTGCACTGCAAGGGCACCGACTATGCCGCGTTCTTCGGCACCCAGTCGGCGC
AGAAACAGAAGCAGTACAACACCGACATCGCCAACGCCAACGCACGCCTGTCGGCCCAGCTGCAATACATCTTCGCCACT
TCGCGCATCGCCCACTACATGAAGGCGATCATGCGCGACAAGATCGGCAGCTTTGCCTCGCGCATGGATGTCGAGCGCTT
CCTCAACCAGTGGCTGGCCAGCTATGTGCTGCTCGACGACACCGCCAGCCAGGAGGCCAAGGCCAAGTTCCCGCTGCGTG
AAGCCCGCGCCGAGGTGTTCGAAGTGCCCGGCAAGCCAGGCGTGTACAAGGCCGTGACCTACTTGCGCCCGCACTACCAG
CTGGATGAACTGACCGCCTCGCTGCGGCTGGTTGCCGAGCTGCCACAGGGCGCGCGCGGCTGA

Protein sequence :
MTDKQTAPQQAGDLVEVENFAPQPSLLDSIISQSRVARSDTERNRTRDLIGELVNQVLEGEMTPSKDLIAVLDSRIAEID
AMLSEQMNEIMHAREFQQLEASWRGLKYQVDQTETSTTLKIHLLNASKKDLVRDLKAASEFDQSALFKKVYEEEYGTFGG
APFGMLIGDYEFNRNPEDMYLLEEISHVAAAAHAPFISAASSELFGWDSFTEMSGPRDLAKIFDTVEYAKWKSFRASEDS
RYVGLTLPHVLGRLPYGPDTTPVEEFNFVESVDGRDHNKYLWMNAAYALGTRVTDAFARYGWCVAIRGVEGGGLVEGLPT
HTFKTDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKGTDYAAFFGTQSAQKQKQYNTDIANANARLSAQLQYIFAT
SRIAHYMKAIMRDKIGSFASRMDVERFLNQWLASYVLLDDTASQEAKAKFPLREARAEVFEVPGKPGVYKAVTYLRPHYQ
LDELTASLRLVAELPQGARG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec18 YP_851426.1 hypothetical protein Not tested PAI II APEC-O1 Protein 2e-85 42
aec18 AAQ96712.1 Aec18 Not tested AGI-1 Protein 2e-85 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
T1E_2458 YP_006533097.1 hypothetical protein VFG2070 Protein 1e-107 51
T1E_2458 YP_006533097.1 hypothetical protein VFG2475 Protein 1e-87 42
T1E_2458 YP_006533097.1 hypothetical protein VFG2093 Protein 8e-87 42