Gene Information

Name : irlR (T1E_1911)
Accession : YP_006532551.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Virulence
Product : winged helix family two component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2086679 - 2087362 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCATTCTTTTGGTTGAAGACAACCGCGATATCCTGGCCAACCTGGCCGATTACCTGGGCATGAAAGGCTACACCGT
CGACTGTGCCCAGGATGGCCTGTCCGGGCTGCATCTGGCTGCCACCGAACATTACGACCTGATCGTACTCGACATCATGC
TGCCAGGCATCGATGGCTACACCCTGTGCAAGCGCCTGCGCGAAGATGCCCGCCGTGACACGCCGGTGATCATGCTCACT
GCCCGTGACCAGCTGGACGACCGCCTGCAGGGCTTCCGCTCTGGGGCTGACGACTACCTGCTCAAGCCATTTGCCCTGTC
GGAGCTGGCGGCGCGCATCGAAGCGGTGCTGCGCCGTGCCCAGGGCGGTGGGCGCCGCACCCTGCAGGTGGCTGACCTGA
GCTACGACCTCGATACCCTCGAGGTAACCCGCCAGGGTCGCCTGCTGAAGCTTAACCCGGTCGGCCTCAAGCTGCTGGCG
GTACTGATGCAGAAAAGCCCGCACGTACTGCGCCGCGAGGTGCTGGAAGAAGCCTTGTGGGGCGACGACTGCCCCGATAG
CGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAAAAACCGTTGCTGCATACCGTCC
ATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAA

Protein sequence : 
MRILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYTLCKRLREDARRDTPVIMLT
ARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRAQGGGRRTLQVADLSYDLDTLEVTRQGRLLKLNPVGLKLLA
VLMQKSPHVLRREVLEEALWGDDCPDSDSLRSHVHQLRQVIDKPFEKPLLHTVHGVGYRLAEGRDGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irlR YP_006532551.1 winged helix family two component BAC0197 Protein 2e-35 43
irlR YP_006532551.1 winged helix family two component BAC0125 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irlR YP_006532551.1 winged helix family two component VFG0596 Protein 1e-33 42
irlR YP_006532551.1 winged helix family two component VFG1390 Protein 3e-31 41