Gene Information

Name : USDA257_p02850 (USDA257_p02850)
Accession : YP_006529157.1
Strain :
Genome accession: NC_018179
Putative virulence/resistance : Virulence
Product : putative translocation protein y4yL
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 50640 - 51308 bp
Length : 669 bp
Strand : +
Note : -

DNA sequence : 
ATGACTGAAATGCAGCCGGCAATTCTGGCCCTTCTTGCGATAACCGCGGCACTCGGCTTGCTGGTGTTAGCGGTCGTCAC
AACCACGGCGTTTGTAAAAGTATCAGTTGTTCTGTTCCTCGTCCGCAACGCACTCGGGACCCAGACGATACCACCTAACA
TAGTGCTGTACGCAGCCGCACTTATCCTCACCATGTTCGTCAGCGCACCCATTGCTGAGCAGACCTATGATCGGATAACA
GATCCGAGACTCCGTTATCAATCGCTCGACGACTGGGCTGAAGCCGCCAAAGCAGGAAGTCAGCCCTTGCTTGAACATCT
CAAGAAGTTCACAAACGAAGAGCAGCGGCGATTTTTCCTCTCCTCGACGGAAAAGGTCTGGCCTGAGGAAATGCGCGCTA
GAGTCACAGCAGATGATTTCGCCATTCTTGTTCCATCTTTTCTGATATCAGAACTAAAGCGCGCGTTCGAAATCGGCTTC
CTCCTTTATCTACCCTTTATCGTCATTGATCTTATCGTCACGACGATATTGATGGCCATGGGGATGTCGATGGTATCCCC
GACGATTATAGCTGTCCCGTTCAAACTATTCTTGTTCGTCGCTATTGATGGCTGGTCAAGATTGATGCACGGACTTGTGC
TCAGTTATACGATGCCGGGAGCTTTATGA

Protein sequence : 
MTEMQPAILALLAITAALGLLVLAVVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRIT
DPRLRYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADDFAILVPSFLISELKRAFEIGF
LLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSYTMPGAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-39 50
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-36 48
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-36 48
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-36 48
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-36 48
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-36 48
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-36 48
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-36 47
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-36 47
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-32 46
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-32 46
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-32 45
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 7e-33 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 5e-31 44
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 5e-31 44
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 5e-33 44
escR CAC81847.1 EscR protein Virulence LEE II Protein 4e-29 43
escR CAI43889.1 EscR protein Virulence LEE Protein 4e-29 43
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 6e-29 43
unnamed AAL06354.1 EscR Virulence LEE Protein 3e-28 43
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 6e-29 43
escR AAK26700.1 EscR Virulence LEE Protein 4e-29 43
escR AAL57527.1 EscR Virulence LEE Protein 4e-29 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-35 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-35 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-35 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-35 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-29 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 6e-29 42
escR AAC38369.1 EscR Virulence LEE Protein 4e-29 42
escR AAC31528.1 L0049 Virulence LEE Protein 4e-29 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-29 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-29 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
USDA257_p02850 YP_006529157.1 putative translocation protein y4yL VFG0188 Protein 5e-39 52
USDA257_p02850 YP_006529157.1 putative translocation protein y4yL VFG0394 Protein 6e-38 49
USDA257_p02850 YP_006529157.1 putative translocation protein y4yL VFG0044 Protein 1e-38 48
USDA257_p02850 YP_006529157.1 putative translocation protein y4yL VFG2338 Protein 3e-24 42
USDA257_p02850 YP_006529157.1 putative translocation protein y4yL VFG0715 Protein 2e-29 42
USDA257_p02850 YP_006529157.1 putative translocation protein y4yL VFG0827 Protein 2e-29 42
USDA257_p02850 YP_006529157.1 putative translocation protein y4yL VFG1012 Protein 1e-30 41