Gene Information

Name : PSJM300_00040 (PSJM300_00040)
Accession : YP_006522450.1
Strain : Pseudomonas stutzeri DSM 10701
Genome accession: NC_018177
Putative virulence/resistance : Virulence
Product : N-6 DNA methylase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 12691 - 15075 bp
Length : 2385 bp
Strand : -
Note : COG0286 Type I restriction-modification system methyltransferase subunit

DNA sequence :
ATGAGCCCCGCCAAGATTCAAGACCAAAGCCAAATCAAGTGGATTTCCGACTTCATCTGGAACATCGCCGATGACCGCCT
GCGCGATGTGTACGTGCGCGGCAAATACCGCGACGTCATCCTGCCCTTCACCGTGCTGAGGCGGCTTGATGCGGTGTTGG
AATCCACCAAGGACGCGGTGCTAGAGCGCAAAAAATTCCTCGATACCCACAAGGTCGCCGAGCAGGACGGCGCCCTGCGC
ATGGCGGCAGGCCAGGCGTTCTACAACGTATCGGAATTCACCCTGGCCAAGCTGAAGGCCAGCGCGGCAGGGCAGCGCCT
GCGCGATGACTTCACCGATTATCTTGACGGCTTCTCGCCTAATGTTCAGGAGATTCTTGCAAAGTTCAACTTCCGCAATC
AGATCCAGAAGCTCGTCGACTCTCACGTGCTCGGCTACCTGATCGAGGATTTCCTCGACCCCGAGATCAACCTCTCGCCA
CTACCTGTCAAAGATACTGATGGCAGCATAAAGCTCCCGGCGCTGGACAATCACGGCATGGGTACTGTGTTCGAAGAGCT
GATTCGTCGCTTCAACGAAGACAACAACCTAGAAGCCGGTGAACACTACACGCCACGCGACGTGGTAAAGCTCATGGCTA
AGTTGTTGTTCCTGCCAGTCGCAAACCTTATCGAATCCAGCACCTACTCTCTATACGACGGCAGCTGCGGCACGGGCGGC
ATGCTGACCGTTGCTGAGGAAGCGTTGCACGAGCTAGCAGAGGAACACGGTAAGGAGGTGTCCATCCACCTGTTCGGCCA
GGAGATCAGTGACGAAACCTACGCTATCTGCAAGGCTGACCTGCTCTTGAAGGGCGAAGGAGCCGAGGCCGAGAACATCG
TAGGCGGTGCAGACAAATCGACCCTGTCCTCCGACCATTTCCGTTCGCGCGAATTCGATTTCATGATCTCCAACCCGCCC
TATGGCAAAAGTTGGAAGACCGATCTGGAGCGCATGGGCGGCAGGAAGGAATTCAGCGATCCGCGCTTTATCGTCAGCCA
CGCGGGCGAGTCTGAGTTCAAGCTCATCACCCGCTCCAGCGACGGGCAGCTCATGTTCCTGGTAAACAAGCTGCAAAAGA
TGAAGCACAACACGCCGCTGGGCAGTCGCATCGCGCTGGTACATAACGGCTCGGCGCTATTTACCGGTGACGCAGGCCAA
GGTGAGAGCAACATCCGCCGCTGGGTGCTGGAGAACGACTGGCTAGAATCGATCATCGCCCTGCCACTCAACATCTTCTA
CAACACCGGCATCGCCACCTACATCTGGGTGCTAGCCAACAAGAAGGCCGAAGAGCGCCGTGGCAAGGTGCAGTTGATCG
ACGCATCGCAATGGTTTCAGCCGCTGCGCCGCAACCTCGGCAAGAAGAACTGCGAATTGAGTGATGCCGACATTGCCTGC
ATCCTCGACCTATACCTTGGCGAGGCACAGCAAACCGTCCAGTCCAAATGGTTCGATACTCAAGACTTCGGCTATTGGAA
GATCACCGTCGAGCGCCCGCTGCGCCTGAAAAGCCAGCTTTCCGACGAGCGCATCGAGCCCCTTCGTTTTGCCTCCGGCG
ACGAGGTACTGCGCGCCGAGATCTACGCCACCCACGGCGAGGCGCTCTATACCGATTTCATCAACCGCAAACCGGCCATC
GAGGCATGGCTGAAAGGCGAGGACGAGAACGAAGACGACGACAGCGAGGACAGCGACAGCAGCGATGACAGTGAGGCTCC
CGCCGCCCGCAAAGCCGTGCCTGCCAAGCGCCGCAAGAAGCTGCTCGACGCATCGACGTGGCAGCGCGACAAGGCGCTGA
TGGAAGTGGCACAACGCGCGCAAAAGGCACTGGGTAGCGCCGTGTTCGACGACCACAATGACTTCCGCACCCGCTTCGGT
GAGGCCCTGAAAGCGGAGGGCGACAAACTCGGTGCGCCAGAGAAGAAGGTCATCTACAAGGCAGTGAGCTGGCGCGACGA
AACCGCGCCTCCCGTTATAGCCAAGCGAACAAAACTTAAAGCTACTGATGCCTTTGTGGCCAATAACGATGGCCGTTTCC
TAGTAGGGGAAGATAAGCACCGAGAAGTTGTCGAATACGAGTCCGATACCGACCTGCGCGACACCGAACAAGTGCCGCTC
AAAGAGCCAGGCGGCATCGACGCCTTTTTCGCCCGCGAAGTGCTGCCGCACGCATCGGATGCCTGGATCGCCATGGATAA
GACCCAGATTGGCTACGAGATTTCGTTCGCCCGCTACTTCTACAAGCCAGCGCCGCTGCGCACGCTGAAGGAAATCCGCG
CGGACATCCTCGCGCTTGAGCAGCAGAGCGAAGGGTTGCTGCACAAGATTGTGGGAGGCGCGTAA

Protein sequence :
MSPAKIQDQSQIKWISDFIWNIADDRLRDVYVRGKYRDVILPFTVLRRLDAVLESTKDAVLERKKFLDTHKVAEQDGALR
MAAGQAFYNVSEFTLAKLKASAAGQRLRDDFTDYLDGFSPNVQEILAKFNFRNQIQKLVDSHVLGYLIEDFLDPEINLSP
LPVKDTDGSIKLPALDNHGMGTVFEELIRRFNEDNNLEAGEHYTPRDVVKLMAKLLFLPVANLIESSTYSLYDGSCGTGG
MLTVAEEALHELAEEHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGADKSTLSSDHFRSREFDFMISNPP
YGKSWKTDLERMGGRKEFSDPRFIVSHAGESEFKLITRSSDGQLMFLVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQ
GESNIRRWVLENDWLESIIALPLNIFYNTGIATYIWVLANKKAEERRGKVQLIDASQWFQPLRRNLGKKNCELSDADIAC
ILDLYLGEAQQTVQSKWFDTQDFGYWKITVERPLRLKSQLSDERIEPLRFASGDEVLRAEIYATHGEALYTDFINRKPAI
EAWLKGEDENEDDDSEDSDSSDDSEAPAARKAVPAKRRKKLLDASTWQRDKALMEVAQRAQKALGSAVFDDHNDFRTRFG
EALKAEGDKLGAPEKKVIYKAVSWRDETAPPVIAKRTKLKATDAFVANNDGRFLVGEDKHREVVEYESDTDLRDTEQVPL
KEPGGIDAFFAREVLPHASDAWIAMDKTQIGYEISFARYFYKPAPLRTLKEIRADILALEQQSEGLLHKIVGGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1769 NP_231404.1 DNA methylase HsdM Not tested VPI-2 Protein 3e-153 46
VC0395_A1367 YP_001217310.1 DNA methylase HsdM Not tested VPI-2 Protein 3e-153 46
VPI2_0017c ACA01834.1 DNA methylase HsdM Not tested VPI-2 Protein 9e-153 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSJM300_00040 YP_006522450.1 N-6 DNA methylase VFG1102 Protein 1e-153 46