Gene Information

Name : PSJM300_02960 (PSJM300_02960)
Accession : YP_006523028.1
Strain : Pseudomonas stutzeri DSM 10701
Genome accession: NC_018177
Putative virulence/resistance : Virulence
Product : two-component response regulator PilR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 661923 - 663263 bp
Length : 1341 bp
Strand : -
Note : COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

DNA sequence : 
ATGACTGCCCGCCAGAAAGCGCTGATCATCGACGACGAACCGGACATCCGCGAGCTGCTGGAGATCACCCTCGGCCGGAT
GAAGCTGGACACCCGTAGCGCACGCAACCTCAAGGAGGCACGCGAGTGCCTCGCCCGTGAACACTACGACCTCTGCCTGA
CCGATATGCGCCTGCCCGACGGCTGCGGGCTGGAGCTGGTTCAGTTCATCCAGCGGCACTACCCGCAACTGCCGGTGGCC
ATGATCACGGCCTATGGCAGCCTGGATACGGCGATCAGCGCACTGAAGGCAGGGGCCTTCGATTTTCTCACCAAGCCGGT
CGACCTGGGCCGGCTCCGCGAACTGGTCAGCACCGCGCTGCGGTTGCGCGCCGCCGGTCCGGAGGAGCTACCGGTGGATG
GTCGGTTGCTGGGCGTATCGCCGCCCATGGCCACGCTGCGCAAGCAGATCGGCAAGCTGGCGCGCAGTCAGGCTCCGGTC
TACATCAGCGGCGAATCGGGCAGCGGCAAGGAGCTGGTTGCCCACCTGATCCACGAGCAGGGCCCTCGTGGCGAGCGCCC
TTTCGTGCCGGTCAACTGCGGCGCCATCCCCTCGGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCA
CCGGCGCCATCGAAGACAAGCAAGGACTGTTCCAGGCGGCCAATGGCGGCACACTGTTCCTCGACGAAGTGGCCGACCTG
CCACTGCCGATGCAGGTCAAGCTGCTGCGCGCAATCCAGGAAAAGGCGGTTCGTGCGGTCGGCGGCGCAGTGGAAATCGC
AGTGGATGTACGCATCCTCTGCGCAACCCACAAGGACCTGGCCAGCGAGGTCGCCGCCGGACGCTTCCGCCAGGACCTGT
ACTACCGCCTGAACGTCATCGAGCTTCGCGTACCACCCCTGCGCGAGCGTCGTGAAGACATCGCCCTGCTGGCCGACAAC
ATGCTGCGCCGGCTGGCCCAGGAATGCGGCGACAGCCCGGCCCGGCTACAGCCGGAAGCGCTTGCCAAGCTGCAGAGCTA
CCGTTTTCCAGGCAACGTTCGCGAGCTGGAAAACATGCTAGAACGGGCCTATACGCTGTGCGAAGGCGACGTCATCAAGG
CCAGTGACCTGCGCCTGGCCGATGCGCCGGGCGCAACGGACGGCGGCGACGCCAGCCTGGCGCAGATCGACAATCTCGAA
GACCATCTGGAAGAAGTCGAGCGCAAGCTGATCATGCAGGCGCTCGAAGAAACCCGCTGGAACCGCACCGCCGCGGCACA
GCGGCTGGGATTGTCGTTTCGCTCGATGCGCTACCGCCTGAAGAAGCTCGGGTTGGACTGA

Protein sequence : 
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGCGLELVQFIQRHYPQLPVA
MITAYGSLDTAISALKAGAFDFLTKPVDLGRLRELVSTALRLRAAGPEELPVDGRLLGVSPPMATLRKQIGKLARSQAPV
YISGESGSGKELVAHLIHEQGPRGERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRAVGGAVEIAVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIALLADN
MLRRLAQECGDSPARLQPEALAKLQSYRFPGNVRELENMLERAYTLCEGDVIKASDLRLADAPGATDGGDASLAQIDNLE
DHLEEVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-97 50
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-97 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSJM300_02960 YP_006523028.1 two-component response regulator PilR BAC0467 Protein 2e-69 44
PSJM300_02960 YP_006523028.1 two-component response regulator PilR BAC0089 Protein 1e-70 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSJM300_02960 YP_006523028.1 two-component response regulator PilR VFG1214 Protein 3e-169 85
PSJM300_02960 YP_006523028.1 two-component response regulator PilR VFG0116 Protein 1e-53 41