Gene Information

Name : PSJM300_11470 (PSJM300_11470)
Accession : YP_006524716.1
Strain : Pseudomonas stutzeri DSM 10701
Genome accession: NC_018177
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein TctD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2521583 - 2522254 bp
Length : 672 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGAATTCTCCTGGTGGAAGATCATCTACAGCTCGCGGAAAGCGTGGCCCAGGCCTTGCGTGCGGCGGGCTGGACGGT
CGATGTGCTGCACGATGGCGTCGCCGCTGATCTCGCCCTCGCCAGCGAGGACTACGCCCTGGCGATCCTCGATGTCGGCC
TGCCTCGATTGGATGGTTTTCAGGTGCTGGCGAGCCTGCGTGGGCGCGGCAAGACCCTGCCGGTACTGATGCTCACTGCG
CGCAGCGAGGTGAGCGATCGGGTTCATGGGCTGAATCTGGGCGCGGATGATTACCTGGCCAAGCCCTTCGAGCTGGCCGA
ACTGGAAGCGCGGGTCAAGGCGCTGTTGCGCCGTAGCGTGGCCGGTGGCGAGCGTCAGCAGCGCTGCGGGGCGCTGGTCC
ATGACCTGGATGCTCGCCGCTTCAGCCTGGCGCAGCAGCCGCTGAGCCTGACCTCGCGCGAGCAGGCCGTGCTCGAGGCG
CTGATCGCGCGACCCGGGCGGGTCATGAGCAAGGATCAGCTGGCGGCCCAGGTGTTCGGTCTGGACCAGGGCGCCAGCGC
CGATGCGATCGAGATCTACATCCATCGGCTGCGCAAGAAACTCGAGGGCGGCGCGGTGCGCATCGTCACCTTCCGCGGCC
TGGGCTATCTGCTGGAAGCCGTGGATGAGTGA

Protein sequence : 
MRILLVEDHLQLAESVAQALRAAGWTVDVLHDGVAADLALASEDYALAILDVGLPRLDGFQVLASLRGRGKTLPVLMLTA
RSEVSDRVHGLNLGADDYLAKPFELAELEARVKALLRRSVAGGERQQRCGALVHDLDARRFSLAQQPLSLTSREQAVLEA
LIARPGRVMSKDQLAAQVFGLDQGASADAIEIYIHRLRKKLEGGAVRIVTFRGLGYLLEAVDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-28 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSJM300_11470 YP_006524716.1 transcriptional regulatory protein TctD BAC0083 Protein 3e-34 45
PSJM300_11470 YP_006524716.1 transcriptional regulatory protein TctD BAC0638 Protein 7e-32 44
PSJM300_11470 YP_006524716.1 transcriptional regulatory protein TctD BAC0197 Protein 1e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSJM300_11470 YP_006524716.1 transcriptional regulatory protein TctD VFG1390 Protein 9e-34 45
PSJM300_11470 YP_006524716.1 transcriptional regulatory protein TctD VFG0596 Protein 5e-29 43