Gene Information

Name : PSJM300_10140 (PSJM300_10140)
Accession : YP_006524452.1
Strain : Pseudomonas stutzeri DSM 10701
Genome accession: NC_018177
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator GacA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2214850 - 2215494 bp
Length : 645 bp
Strand : -
Note : COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

DNA sequence :
TTGATTAGGGTGCTGGTGGTCGATGACCACGATCTGGTGCGCACAGGCATTTCCCGCATGTTGGCCGATGTCGACGGGCT
ACAGGTGATCGGGCAGGCCGATTCGGGGGAGATGGCAATCAGGAAGGCGCGGGAACTCAAACCCGATGTCGTGCTGATGG
ACGTGAAGATGCCGGGCATCGGCGGCCTCGAAGCGACCCGCAAGCTGCTGCGCAGCTACCCCGACATCAAGGTCATCGCC
GTGACTGTCTGCGAGGAAGATCCCTTCCCGACCCGCCTGTTGCAGGCAGGCGCCGCGGGCTACCTGACCAAGGGCGCCGC
GCTGGAAGAAATGATCCAGGCCATTCGCATGGTCTTTGCAGGGCAGCGCTATATCAGTCCCCAGATCGCCCAGCACCTTG
CACTCAAGGCGTTCCAGCCACAAAGCAATGGTTCGCCCTTCGATCTGCTCTCCGAGCGGGAAATCCAGATCGCGCTGATG
ATCGCGAACTGCCAGAAGGTGCAGACGATTTCCGACAAGCTTTGCCTGTCGCCCAAGACGGTCAACACTTACCGTTATCG
CATCTACGAGAAGCTCACGATTACCAGCGACGTAGAGCTGGCATTGCTGGCGGTTCGCCACGGTATGGTCGACACGATCA
ACTGA

Protein sequence :
MIRVLVVDDHDLVRTGISRMLADVDGLQVIGQADSGEMAIRKARELKPDVVLMDVKMPGIGGLEATRKLLRSYPDIKVIA
VTVCEEDPFPTRLLQAGAAGYLTKGAALEEMIQAIRMVFAGQRYISPQIAQHLALKAFQPQSNGSPFDLLSEREIQIALM
IANCQKVQTISDKLCLSPKTVNTYRYRIYEKLTITSDVELALLAVRHGMVDTIN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 5e-51 56
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 5e-51 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSJM300_10140 YP_006524452.1 DNA-binding response regulator GacA VFG1889 Protein 7e-49 54