Gene Information

Name : PSJM300_08820 (PSJM300_08820)
Accession : YP_006524190.1
Strain : Pseudomonas stutzeri DSM 10701
Genome accession: NC_018177
Putative virulence/resistance : Virulence
Product : two-component response regulator PhoP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1897377 - 1898054 bp
Length : 678 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAAAGTGCTGGTGGTGGAAGACGAGGCGCTGCTGCGCCACCACCTACATACCCGGCTGAGCGAAAGCGGCCATGTGGT
CGATGCAGTCGCCGACGCGGAAGAAGCGCTGTACCGGACCCACGAATTCAACCATGACCTGGCGGTGATCGACCTCGGCC
TGCCCGGCATCAGCGGGCTGGACCTGATTCGCCAGCTGCGCAGCAATGGCGAGAGTTTCCCCATTCTCATCCTGACCGCC
CGCGGCAACTGGCAGGACAAGGTGGAAGGACTCGCTGCCGGCGCCGACGACTATGTGGTCAAGCCGTTTCAGTTCGAGGA
GCTGGAAGCCCGCCTCAATGCGCTGCTGCGACGGTCATCCGGCTTCACCCAGGCGAGCATCGAAGCCGGGGCGCTGCGGC
TAGACCTGAACCGCAAGCAGGCCACGGTGAACGACGAGCCTCTGGCCCTGACGGCGTTCGAATATCGCATTCTCGAATAC
CTGATGCGACATCAGCAGCAGGTCGTGGCCAAGGAGCGGCTGATGGAGCAGCTCTACCCCGGCGACGAAGAACGCGATGC
GAATGTCATCGAGGTGCTGGTCGGACGCCTGCGACGCAAGCTCGAAGCCCAGGGCAATCTCAGGCCCATCGAAACCGTTC
GCGGCCTCGGCTACCTGTTCACCGAGCGTTGCCGATGA

Protein sequence : 
MKVLVVEDEALLRHHLHTRLSESGHVVDAVADAEEALYRTHEFNHDLAVIDLGLPGISGLDLIRQLRSNGESFPILILTA
RGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSGFTQASIEAGALRLDLNRKQATVNDEPLALTAFEYRILEY
LMRHQQQVVAKERLMEQLYPGDEERDANVIEVLVGRLRRKLEAQGNLRPIETVRGLGYLFTERCR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 5e-20 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSJM300_08820 YP_006524190.1 two-component response regulator PhoP NC_002516.2.879194.p Protein 2e-78 86
PSJM300_08820 YP_006524190.1 two-component response regulator PhoP CP000647.1.gene1136. Protein 9e-47 56
PSJM300_08820 YP_006524190.1 two-component response regulator PhoP BAC0530 Protein 9e-47 56
PSJM300_08820 YP_006524190.1 two-component response regulator PhoP CP001918.1.gene2526. Protein 2e-46 55
PSJM300_08820 YP_006524190.1 two-component response regulator PhoP NC_002695.1.913289.p Protein 2e-46 55
PSJM300_08820 YP_006524190.1 two-component response regulator PhoP CP000034.1.gene2022. Protein 2e-47 55
PSJM300_08820 YP_006524190.1 two-component response regulator PhoP CP001138.1.gene1939. Protein 1e-47 55
PSJM300_08820 YP_006524190.1 two-component response regulator PhoP CP004022.1.gene1005. Protein 6e-44 50
PSJM300_08820 YP_006524190.1 two-component response regulator PhoP BAC0288 Protein 1e-22 44
PSJM300_08820 YP_006524190.1 two-component response regulator PhoP BAC0083 Protein 9e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSJM300_08820 YP_006524190.1 two-component response regulator PhoP VFG0475 Protein 9e-48 55
PSJM300_08820 YP_006524190.1 two-component response regulator PhoP VFG1390 Protein 1e-22 41