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Name : PSJM300_08115 (PSJM300_08115) Accession : YP_006524049.1 Strain : Pseudomonas stutzeri DSM 10701 Genome accession: NC_018177 Putative virulence/resistance : Virulence Product : nucleotide sugar epimerase/dehydratase WbpM Function : - COG functional category : - COG ID : - EC number : - Position : 1736364 - 1738304 bp Length : 1941 bp Strand : + Note : COG1086 Predicted nucleoside-diphosphate sugar epimerases DNA sequence : GTGGCCACGGATGTGCTGTTGGTCTGGGTGGCGCTTTGGCTGGCTTTTTTCGTTCGTGTGGGCGATGCGGATTTTGTGCA GCCACTAGGGGGGCACGCCTGGCTGTTCGGCATCGCCCCGCTGATCGCCATACCCTTCTTCATCCGCTTCGGCATGTACC GCGCGGTGATGCGCTATTTCGGCAACGATGCACTGATGGCCATTGCCAAGGCCGTTACGTTGTCGGCGTTGCTGCTCTCG CTGGCGGTCTACTGGCGCACCGATGTGCCCAAGGTCATACCTCGTTCGATGGTATTCAACTATTGGTGGTTGAGCCTGGT CTTGATCGGCGGTCTGCGCCTGGTGATGCGACAGTACTTCATGGGTGACTGGTTTTCCCCGGATTCGCTCATGAAGTTCA AAGGTCGCGATGCGAGTTTGCCCAAGGTGGCGGTTTACGGCGCAGGAGCGGCGGGAAATCAGCTGGTTGCGGCCTTGCGC CTGGGGCGCGCGATGCGTCCGGTTGCGTTCATCGACGATGACCCCAATCTTTTCAACCGCACCATCGCCGGGTTGCGAGT TTATTCGCCCAAGCATATTCAGCAGATGATCGATGAAACGGGTGCCGATGAAATTCTGTTGGCAATCCCTTCGGCGTCGC GTGGCAGGCGGCGTGAAGTGCTGGAGACGCTAGAGCCTTATCCACTTCATGTTCGCAGCGTGCCGGGCTTCATGGACCTG GCCAGTGGCCGGGTGAAGGTCGAGGATATCCAGGAAGTGGATATCGCGGATCTGCTCGGGCGTGATGCAGTGCCACCGCA GCAGGCGCTGTTCGAGCAGTGCATTATCGACAAAGTCGTGATGGTGACTGGTGCTGGCGGCTCGATTGGCTCGGAGCTGT GCCGGCAGATTCTGGCGAACAAGCCTCGCACGCTGCTGTTGTTCGAACACAGCGAATTCAACCTTTACAGCATTCACATC GAGCTGGAGCGTACGATCGAGCGGGCTTCGCTACCGGTGAGGTTGGTGCCGATCATGGGCTCCATTCGTAATCCCGAGCG CCTGCTGGACGTGATGCGCACCTGGCAGGTGGAGACGATCTACCACGCAGCGGCGTACAAGCATGTGCCCATGGTGGAAC ACAATGTCGCGGAAGGCGTGCTTAATAATGTGCTTGGCACCATGAACACGGCCCAGGCGGCGGTGCAGGCCGGGGTGGCC AACTTCGTTCTGATCTCTACCGACAAGGCTGTGCGGCCCACCAACGTGATGGGCAGTACCAAGCGCGTGGCGGAGATGAT TCTGCAGGCGTTGAGTCGTGAAACTGCGCCGGTACTTTTTGGCGCTGATGACGCGGTACATCACGTCAACAAGACGCGCT TCACCATGGTGCGTTTCGGTAATGTGCTGGGCTCCTCGGGCTCGGTGATTCCGCGCTTCTACCAGCAGATTCGCAACGGT GGGCCGGTGACTGTGACCCATCCGAAGATCACCCGTTACTTCATGACCATTCCCGAGGCCGCTCAGTTGGTTATCCAGGC GGGTTCCATGGGGCAGGGTGGTGATGTGTTCGTGCTGGATATGGGGCAGCCTGTGAAGATTGCCGAGCTGGCCGAGAAGC TGATTCATCTGTCCGGCCTGAGCGTGCGTTCGGAAAAGAGCCCGCACGGGGATATCGCGATCGAATTCACTGGCTTGCGG CCCGGGGAAAAGCTGTATGAGGAGTTGCTGATCGGCGACAACGTCAGTGCTACCGAACACCCGATGATCATGCGGGCCGA CGAAGAATACTTCACCTGGGATGTGCTCAAGGGCTTGCTGGCCCGGCTGCTCAAGGCTGTGGAGGACGATGACTATCCCC AGGTTCGTGTGCTGTTGCGCGAGGCGGTGAGTGGCTATGTGCCCGAAGGGGAAATCGTGGATCTGATCTATCAGCAGCGT CGAGCGGGGCCAGGGGAGTAG Protein sequence : MATDVLLVWVALWLAFFVRVGDADFVQPLGGHAWLFGIAPLIAIPFFIRFGMYRAVMRYFGNDALMAIAKAVTLSALLLS LAVYWRTDVPKVIPRSMVFNYWWLSLVLIGGLRLVMRQYFMGDWFSPDSLMKFKGRDASLPKVAVYGAGAAGNQLVAALR LGRAMRPVAFIDDDPNLFNRTIAGLRVYSPKHIQQMIDETGADEILLAIPSASRGRRREVLETLEPYPLHVRSVPGFMDL ASGRVKVEDIQEVDIADLLGRDAVPPQQALFEQCIIDKVVMVTGAGGSIGSELCRQILANKPRTLLLFEHSEFNLYSIHI ELERTIERASLPVRLVPIMGSIRNPERLLDVMRTWQVETIYHAAAYKHVPMVEHNVAEGVLNNVLGTMNTAQAAVQAGVA NFVLISTDKAVRPTNVMGSTKRVAEMILQALSRETAPVLFGADDAVHHVNKTRFTMVRFGNVLGSSGSVIPRFYQQIRNG GPVTVTHPKITRYFMTIPEAAQLVIQAGSMGQGGDVFVLDMGQPVKIAELAEKLIHLSGLSVRSEKSPHGDIAIEFTGLR PGEKLYEELLIGDNVSATEHPMIMRADEEYFTWDVLKGLLARLLKAVEDDDYPQVRVLLREAVSGYVPEGEIVDLIYQQR RAGPGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 4e-81 | 44 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 4e-76 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSJM300_08115 | YP_006524049.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG0029 | Protein | 2e-118 | 49 |
| PSJM300_08115 | YP_006524049.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG1300 | Protein | 1e-76 | 44 |
