Gene Information

Name : cbrD (HMPREF9154_3156)
Accession : YP_006513277.1
Strain : Propionibacterium propionicum F0230a
Genome accession: NC_018142
Putative virulence/resistance : Virulence
Product : achromobactin ABC transporter, ATP-binding protein CbrD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3416125 - 3416931 bp
Length : 807 bp
Strand : -
Note : -

DNA sequence : 
GTGACCGCGAACCATTCCCTCACAGCCGTCGGACTCGGGCTCGCCTACGGCGACCGCACTGTCATCGACAACCTCGACCT
GACCGTCAAACCCGGGGCCATCACCTCCATCGTCGGCGCCAACGGCTGCGGCAAATCCACGCTGCTGCGTTCCCTCGCCC
GGCTGCTGCAACCCAGGCACGGACAGGTGCTCCTCGACGGCAAATCCCTCCACGAACAGCCGACCAAGGAGATCGCGAAG
GTCCTGGGCCTGCTGCCACAGTCGCCGACCGCCCCGGAGGGCATCGTCGTCGCCGACCTCGTGGGTCGCGGACGCCACCC
CCACCAGGGGATGCTCGGGAGGTGGAGCCCCCGCGACTACGAGGTGGTGGCGGAATCCCTCGCCGCCACCGACACCACCG
AGCTGGCCGACCGTCCCGTCGACGAGTTGTCGGGCGGTCAACGGCAGCGCGTGTGGATCGCGATGGCGTTGGCGCAGGAA
ACCGACGTCCTGCTGCTGGATGAACCCACCACTTACCTCGACGTCGCGAACCAGCTCGAGGTGCTCGACCTGCTGATCGA
CCTCAACGCCAGGAGGGGAACCACGGTCGTGATGGTGCTGCACGACCTCGGGCTGGCGGCCCGCTACTCCGACGAGCTCA
TCGCGATGCGCTCCGGAAGCATCCTGGCGCAGGGCACCCCGTCGGATGTGGTGACGGAGGAGACGGTAAAGGAGGTGTTC
GGGATCTCCTCGAAGGTGGTGCCGGACCCCGTCTCCGGGGCGCCGCTGGTGATGCCCATCGGCCGGCACCGGGTGAAGGG
GGAGTGA

Protein sequence : 
MTANHSLTAVGLGLAYGDRTVIDNLDLTVKPGAITSIVGANGCGKSTLLRSLARLLQPRHGQVLLDGKSLHEQPTKEIAK
VLGLLPQSPTAPEGIVVADLVGRGRHPHQGMLGRWSPRDYEVVAESLAATDTTELADRPVDELSGGQRQRVWIAMALAQE
TDVLLLDEPTTYLDVANQLEVLDLLIDLNARRGTTVVMVLHDLGLAARYSDELIAMRSGSILAQGTPSDVVTEETVKEVF
GISSKVVPDPVSGAPLVMPIGRHRVKGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 8e-67 53
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 5e-66 48
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 5e-66 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-55 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-55 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 5e-55 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 5e-55 46
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-53 44
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-51 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-51 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-51 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-51 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-51 41
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 2e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_006513277.1 achromobactin ABC transporter, ATP-binding protein CbrD BAC0164 Protein 3e-53 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_006513277.1 achromobactin ABC transporter, ATP-binding protein CbrD VFG0925 Protein 2e-68 51
cbrD YP_006513277.1 achromobactin ABC transporter, ATP-binding protein CbrD VFG1042 Protein 2e-53 44