Gene Information

Name : A225_0053 (A225_0053)
Accession : YP_006495856.1
Strain : Klebsiella oxytoca E718
Genome accession: NC_018106
Putative virulence/resistance : Virulence
Product : type 1 fimbriae anchoring protein FimD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 57011 - 59641 bp
Length : 2631 bp
Strand : +
Note : -

DNA sequence :
ATGACGTTAAAAATAAAATATATCACCCTCGCGGTGATGCAGGTTCTATTTGCCCGGCGTCGGGTATACCGTATTATTTT
GCCGGCAACCTTATCGGCATTACCGTTATCCGCGCTGGCGGATAACTATTTTAACCCTGCGTTTTTATCGGACGATCCTA
ACGCGGTGGCCGATCTTTCGCATTTCGAAAAGGGCGATAGCCAGGCCCCCGGTAAATATCACGTTGATATTTATCTGAAT
AAGCAGCTGGTCTCCACGGAAGACGTGAACTTTAAAGCGACAAAAGGCGGCCAGGATGATACCGGGCTGGCGCCGTGCTT
TACCACCGGGCGTCTGGAACAGATGGGGGTCAATACCAAAGCCTTCCCGGACCTGGCGAAGCTGGCGCCGGAGCAGTGCG
TGCCCTTTGCCGCCATACCGGAAGCTACCACCGAATTCGACTTTGAGCATCAGCAGCTGAACATCAGCGTGCCGCAGGCG
GCGCTAAAGCAGAGCGCGCGCGGTTATATCCCCCCGGAAGAGTGGGATCAGGGGATCAACGCGCTGCTGCTGAACTATGA
CTTCACCGGCGGCAACAGCGGCGGTGATAGCAAAGAAGACAGCTACTATCTCAACCTGCAAAGCGGCCTGAACCTCGGCG
CCTGGCGCCTGCGCGACTACTCCACCTGGAACTACACCAGCGGCGAGGGCGACACGCAGAACAAGTGGGAGCATATCAGC
ACCTACGTCGAGCGCACGATCGCGCCGCTGAAGGCGGAGCTTACGCTGGGGGAAAGCTACACCCCGTCGGACGTTTTCGA
CAGCCTCGGCTTTCGCGGCGTCCAGATTGCCTCCGATGACAACATGCTGCCGGACAGCCTGAAAGGCTTTGCGCCGACGG
TCCGCGGTATCGCGAAGAGCAACGCCAGGGTCACCATCAAGCAGAACGGCTACGTTATCTACCAGACCTACGTCTCGCCG
GGCGCCTTCGCCATTAACGATCTCTACCCGACCTCGTCGAGCGGCGACCTGCAGGTGACGGTAAAAGAGAGCGACGGTAG
CGAAAATACCTTTACCGTGCCGTACTCCGCGGTGCCGCTGCTGCAGCGCGAAGGACGGCTTAAATACGCCCTGACCGCCG
GTAAATACCGCAGCACCAACGATGATCAGGATGAGGTCAATTTCGCCCAGGGAACGGCAATTTACGGTTTGCCGCATGGC
TTCACGCTGTATGGCGGTACGCAGGTCAGCAACGACTACCACGCCTTTGCGCTGGGCGCCGGGCTGAACATGGGGGACTT
CGGCGCGATCTCCGCCGATGTCACCCAGGCCAACAGTACCCTCGCCGACGGCAGCCAGCACGACGGTCAGTCGGTGCGCT
TCCTCTACGCCAAGGCGCTGAACGATCTCGGCACCAACTTCCAGCTGCTGGGCTACCGCTACTCGACGGAGGGGTTCTAC
ACCCTCGACGAGACGACGTATAAAAACATGAGCGGCTATACCGGCGACAATGAGTGGAAGGATGAGGATCACGACGGCAA
GCAGGATAAGCCGGTGTGGACCGATTACTACGATCTCTACTACACCAAAAAAGGCAAAGCGCAGCTCAATATCTCGCAGC
AGGTCGGCAAAATCGGCTCGATTTTTGTCACCGGCTCCGAGCAGACCTACTGGCACACCGATGAGAAAGATCGCATGTTG
CAGGTGGGCTATAACGGCAGCTGGAACGGCATCTCCTATAGCCTGACGTGGAACTATGACAAGTCGCCGGGGGAAGAGGA
GGCGGATCAGATCTACGCCTTTAATATTTCGCTGCCGATTGGCCAGTGGCTCTCCAGCAACCATAGCGCGGATATCTACC
GTTCGGCCAATACCACCAATATGAGCTTCGGCACCACCACCGACCAGCACGGTAAGACCACCGGGACCACCGGCATCAAC
GGGACGCTGCTGGCGGATAACAACCTGAGCTATAACGTGCAGGAGAGCGACGGCAACCACGGCACCAGCAACAGTGGCAA
CGCCAACATGAGCTATCAGGGCACCTACGGTAACCTGCAGGCCGGCTACAACTACAGCGACGGCTACCATCAGGTGAACT
ACGGGGTGAGCGGCGGCGTGGTGGTCCACCGCAACGGCGTCACCCTTAGCCAGCCGCTCGGCGACACCAATATTCTGGTG
AAAGCGCCGGGGGCGGCCGGGGTCGAGCTGGAAAACGCCACCGGGGTGAAAACCGACTGGCGCGGCTACGCGGTGATCCC
GTACGCCACTACCTATCGCCAGAACCGCGTGGCGCTGAATACCAACTCCATGGGGCAGAACGTCGATATTGAAGACGCGG
TCACCAACGTGGTGCCGACCCAGGGGGCGCTGGTGCGCGCCGAATTTAACGCCCACGTCGGGGTGCGCGCGCTGATGACC
CTGATGCATAACGGCAAGCCGGTGCCGTTCGGCGCCACGGTCAGCCAGAAGGCGGGTAACAGCACCATCGTCGGCGACGA
CGGCCAGGCCTATCTCGCCGGGCTGCCACTGAACGGCATGCTGGAAGTGCAGTGGGGCGAGGGCACCGGACAGCACTGCG
TGGTGAAATATCAACTTCCGGAGAGCGCGAAGCAGCAGCCGGTGAATAAATTAAGTGAAAGGTGTCAGTGA

Protein sequence :
MTLKIKYITLAVMQVLFARRRVYRIILPATLSALPLSALADNYFNPAFLSDDPNAVADLSHFEKGDSQAPGKYHVDIYLN
KQLVSTEDVNFKATKGGQDDTGLAPCFTTGRLEQMGVNTKAFPDLAKLAPEQCVPFAAIPEATTEFDFEHQQLNISVPQA
ALKQSARGYIPPEEWDQGINALLLNYDFTGGNSGGDSKEDSYYLNLQSGLNLGAWRLRDYSTWNYTSGEGDTQNKWEHIS
TYVERTIAPLKAELTLGESYTPSDVFDSLGFRGVQIASDDNMLPDSLKGFAPTVRGIAKSNARVTIKQNGYVIYQTYVSP
GAFAINDLYPTSSSGDLQVTVKESDGSENTFTVPYSAVPLLQREGRLKYALTAGKYRSTNDDQDEVNFAQGTAIYGLPHG
FTLYGGTQVSNDYHAFALGAGLNMGDFGAISADVTQANSTLADGSQHDGQSVRFLYAKALNDLGTNFQLLGYRYSTEGFY
TLDETTYKNMSGYTGDNEWKDEDHDGKQDKPVWTDYYDLYYTKKGKAQLNISQQVGKIGSIFVTGSEQTYWHTDEKDRML
QVGYNGSWNGISYSLTWNYDKSPGEEEADQIYAFNISLPIGQWLSSNHSADIYRSANTTNMSFGTTTDQHGKTTGTTGIN
GTLLADNNLSYNVQESDGNHGTSNSGNANMSYQGTYGNLQAGYNYSDGYHQVNYGVSGGVVVHRNGVTLSQPLGDTNILV
KAPGAAGVELENATGVKTDWRGYAVIPYATTYRQNRVALNTNSMGQNVDIEDAVTNVVPTQGALVRAEFNAHVGVRALMT
LMHNGKPVPFGATVSQKAGNSTIVGDDGQAYLAGLPLNGMLEVQWGEGTGQHCVVKYQLPESAKQQPVNKLSERCQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 54
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 0.0 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A225_0053 YP_006495856.1 type 1 fimbriae anchoring protein FimD VFG0446 Protein 0.0 55
A225_0053 YP_006495856.1 type 1 fimbriae anchoring protein FimD VFG0876 Protein 0.0 53
A225_0053 YP_006495856.1 type 1 fimbriae anchoring protein FimD VFG1645 Protein 0.0 50
A225_0053 YP_006495856.1 type 1 fimbriae anchoring protein FimD VFG0912 Protein 0.0 50
A225_0053 YP_006495856.1 type 1 fimbriae anchoring protein FimD VFG0454 Protein 3e-178 46