Gene Information

Name : A225_4609 (A225_4609)
Accession : YP_006500285.1
Strain : Klebsiella oxytoca E718
Genome accession: NC_018106
Putative virulence/resistance : Virulence
Product : manganese ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4843528 - 4844382 bp
Length : 855 bp
Strand : +
Note : inner membrane permease protein SitD

DNA sequence :
ATGCTGAGCGCGCTGATTGAACCTTTCCAGTTCTCCTTTATGGTCAACGCCATGCTGGTGGCGGCGATCGTTGCCGTCCC
CTGCGCGCTGCTGTCGGTGTTTTTGGTGCTCAAGGGCTGGGCGCTGATGGGCGATGCCATGAGCCACGCGGTTTTTCCGG
GCGTGGTGGTGGCGTATATCCTCGGTATCCCCTTCGCCATCGGCGCGTTTATCGCCGGGTTGTTCTGCGCCATCGCCACC
GGTTATCTCGACGATAACAGCCGCATTAAGCGCGATACGATCATGGGCATCGTCTTTTCCGGGATGTTTGGCGCGGGCCT
GGTGCTGTACGTGTCGATTCAGTCGGAGGTCCATCTCGATCATATTCTGTTTGGCGACATGCTGGGTATTTCCGCCAGCG
ATATTGCGCAAACGTCGCTGATCGCGCTGGCGATTGCGCTGATAATCGGGCTTAAGTGGCGTGATTTTCTGCTGCACGCC
TTTGATCCGCAGCAGGCGAAGGCCAGCGGATTGCGCTGCGGGCTGCTGCATTATGGGCTGCTGTGCATGATTGCGCTGAC
CATCGTGGCGACGCTGAAAGCGGTGGGGATCATTTTGTCGATTTCGCTGCTGATAGCGCCGGGGGCGATCGCTCTGCTGC
TGACGCGACGTTTTGTCAGCGCCCTGCTGCTGGCGGTGGCGATAGCGTTAAGCTGTTCGCTGGGCGGCGTGTGGCTGTCG
TTTTATCTCGACAGCGCCCCGGCGCCGACCATTGTGGTGCTGTTTACCGTCCTGTTCGTTATCACGTTTGTCTGGACGTC
GGTTCGCGATAGTCAGACCACGGCTCGTTCCGGCGAAGCCCCGGGTCGCGGCTGA

Protein sequence :
MLSALIEPFQFSFMVNAMLVAAIVAVPCALLSVFLVLKGWALMGDAMSHAVFPGVVVAYILGIPFAIGAFIAGLFCAIAT
GYLDDNSRIKRDTIMGIVFSGMFGAGLVLYVSIQSEVHLDHILFGDMLGISASDIAQTSLIALAIALIIGLKWRDFLLHA
FDPQQAKASGLRCGLLHYGLLCMIALTIVATLKAVGIILSISLLIAPGAIALLLTRRFVSALLLAVAIALSCSLGGVWLS
FYLDSAPAPTIVVLFTVLFVITFVWTSVRDSQTTARSGEAPGRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 9e-80 84
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-80 84
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-80 84
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-80 84
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-80 84
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-32 43
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-32 43
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-32 43
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-32 42
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-32 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A225_4609 YP_006500285.1 manganese ABC transporter BAC0352 Protein 4e-80 84
A225_4609 YP_006500285.1 manganese ABC transporter BAC0441 Protein 9e-32 44
A225_4609 YP_006500285.1 manganese ABC transporter BAC0351 Protein 1e-32 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A225_4609 YP_006500285.1 manganese ABC transporter VFG0528 Protein 4e-80 84
A225_4609 YP_006500285.1 manganese ABC transporter VFG0527 Protein 1e-32 43